Glyma06g46740 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g46740

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49324568
stop:	49328298
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g46740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07050	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr5:2191533-2193416 REVERSE LENGTH=402	SoyBase	E_val: 0	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7LID0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=2 Tax=Medicago truncatula RepID=G7LID0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KFJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFJ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g46740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g46740

Paralog	Evidence	Comments
Glyma04g15590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g46740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g310700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g46740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g46740

Limit To All Plant Sequences

>Glyma06g46740.1   sequence type=CDS   gene model=Glyma06g46740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTGAAAAGCTTAGAAGTTGTGCAAACTTCCTTGAGAACTCTAAACCCTACTTTGCCATGATTGCTATACAATTTGGCTATGCAGGCATGAACATTATCACTAAGATTTCCCTCAACCGTGGCATGAGCCACTATGTCCTCGTTGTTTATCGTCATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAGGAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGGGCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACTTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTTTTATGCCGGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGGCCATGTTGATGACCTTGTACAAAGGTCCTATGGTTTGGACCAAAGATGCACCTCATAATGGGCAAATCAATAATGCAACAAATACCACAACATATTCAGACAAGGATTGGTTCATAGGCTCTATCCTCCTAATCATTGCCACTCTTGCCTGGGCATCCCTCTTTGTTTTACAAGCCAAAGCCATTGAAACCTACAAAAATCACCAGCTAAGCCTCACATCACTTATCTGCTTCATAGGCACTCTTCAAGCTATTGCAGTTACTTTTGTTATGGAACACAAGCCATCCGTGTGGACAATTGGCTGGGATATGAACTTACTTGCCGCTGCCTATGCTGGGATTGTTACATCAAGCATAACATACTATGTCCAAGGATTGGTAATTAAGAAGAAAGGGCCTGTTTTCGCAACTGCATTTAGCCCTCTGATGATGATCATTGTAGCCATCATGGGCTCCTTTATCCTTTCAGAGCAGCTTTTTCTTGGAGGTGTTCTTGGTGCTATCTTGATCGTTATAGGCTTATACTCAGTTCTTTGGGGAAAGCACAAAGAACAAGTGGTGAAGAACGAGGTAGAGGATATACCCTTGCCTGTAAAGGGTGCTCAACTTGATGGAAACCCAGAAACACTTATTGATTCCACTGATCAGAAATCTGATTCCAACAAGATCTCTTCACATATAATTAATGTGTCTATCCCTGAGCTTCCCATGAAATCTAATAACAGTTAA

Predicted protein sequences of Glyma06g46740

Limit To All Plant Sequences

>Glyma06g46740.1   sequence type=predicted peptide   gene model=Glyma06g46740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATEKLRSCANFLENSKPYFAMIAIQFGYAGMNIITKISLNRGMSHYVLVVYRHAFATAVVAPFAFIFERKAQPRITFPIFMQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTFVMAVLCRMEKINMKKVRCQAKVVGTLVTVAGAMLMTLYKGPMVWTKDAPHNGQINNATNTTTYSDKDWFIGSILLIIATLAWASLFVLQAKAIETYKNHQLSLTSLICFIGTLQAIAVTFVMEHKPSVWTIGWDMNLLAAAYAGIVTSSITYYVQGLVIKKKGPVFATAFSPLMMIIVAIMGSFILSEQLFLGGVLGAILIVIGLYSVLWGKHKEQVVKNEVEDIPLPVKGAQLDGNPETLIDSTDQKSDSNKISSHIINVSIPELPMKSNNS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain