SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08840 | AT | Annotation by Michelle Graham. TAIR10: DNA replication helicase, putative | chr1:2829579-2838369 REVERSE LENGTH=1315 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004003 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent DNA helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1805 | KOG | DNA replication helicase | JGI | ISS | |
| PTHR10887 | Panther | DNA2/NAM7 HELICASE FAMILY | JGI | ISS | |
| PTHR10887:SF14 | Panther | RIBONUCLEASE R | JGI | ISS | |
| PF01930 | PFAM | Domain of unknown function DUF83 | JGI | ISS | |
| PF08696 | PFAM | DNA replication factor Dna2 | JGI | ISS | |
| UniRef100_F4HXR6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA replication ATP-dependent helicase Dna2 n=1 Tax=Arabidopsis thaliana RepID=F4HXR6_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_F6GVH0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6GVH0_VITVI | SoyBase | E_val: 0 | ISS |
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Glyma06g46721 not represented in the dataset |
Glyma06g46721 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g310500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g46721.1 sequence type=CDS gene model=Glyma06g46721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCCGAGGAAGAAGAAGCTCAATCTACAACAACAACAACAACAACAACAACAACAACCACCTTCCAAGTTCGGCATTCAGCACTTCTTCGAACGCGCTTCTCAGAAGCAGCAACATCTCCAACCCCACACCACCACCACCACCACCACCGCCAATGCACCACCACCAGAAGAACAACAACCACCCAACGAGGTGTCTCCGCAGACACGCTTCAAATTCTCACCTGGGATGTTGGTGAAGCAGAGCCAGGATGAGGTGGTTGACGAGGTTACCTGGAAGATATCTCCTGTCAATGAGAGGCTCCAGGCGGTTTCGAAATACACGCCGGAAGTGATTAAAGCCTTGGCCGCCTCTTCCAAAATCAACTTGTCGCCAATTCGCAGCAGCGGCAACAAGGAGACTTGTCTTGATAAGGTTATTACTTCGCCGACTCCCAAGGTGCCATTGAGCTTCAAAAGGATAAGCTCGGCCCGCGATGTGAGTGGACAGAGCCCCTTCAGAACTCCACCATCGTATCGCCCTGACAAGGTGCAGCGTGTCAAGGATATTGAACGCATCAGACCATGCGACAATCTTTTATTAAGGCAGAACAAAAAGGCATTGCTTGAACTGTTAGATCAAGTTGAGGATGCCATTGCTGTTGATGATGTTACAGTTTGTAATAACAACACTTATTCCTTTAAAGTTCCGCAAGATCTAATTGCTAATGAGCTTCCTGTCAAAGTCAATCCTACAGTAGAAAGGACTAAATCAGATATACCTAAAGAGGTTGTTGATGTCTTCAGTTCTAATTATTTGGTTTTGGAGGTATCTGAACTTAGGTCTGCTGATTCATCTGATGCCCCATGCTCATCATACAAGGTGCTTCGTTTGCTAAATGAACAAACCGGAGAAGAGAGGGCTGTAAACCTTCATAATGAGTGGTTTGATAGTGTAATTGCACCTGGAGATACTGTGCACATAATCGGTCAATTCGACCTGGGGGGAAATTGTGATATTGATCACAATAAAAACTTTTTGATTGTACACCCAGATATTCTAGTGTCTGGAACACGGGTTGCTGCCAGTTTAAGTTGCCCAAGGAGAACTGTCTTAGACGAGAGGTTAAAAAACAATGATTACTCAATTATAGCATTAACTGGAACGCTGCTGCACCAAATTTTTCAGGCTGGGCTTACGAAAGAAAATCCTACAGTAAATTTCATGGAAGATTATGCAGAAGTGGTATTACAGAGAAACATTGAAAGTTTGTATGCATGTGGAGTAAATGAAAATGATGTTCGCAAAACCTTGAGAGATGCTATTCCTAGAATATTGAGTTGGATCAAGCAGTTCAAAAATACGAAGGAAAGAAAAGACCTCAGTGTCAATTTTGGATTTGATGACGAGCCAAAGAATGTTGGCATATCAGAGGTAATTGATATTGAAGAGATGGCTTGGGCTCCAAAATATGGTTTGAAAGGAATGATTGATGCTTCAGTCAGAGTGAAAATTCAATCACAAAAAGATGATCCGGAGGAAAAGATCATGCCATTAGAGTTCAAAACTGGAAAAGCACCATACAGCCAGTCATCAGTAGAGCACAGGGCCCAAGTAATTTTGTACACTCTCCTAATGTCTGAAAGGTATCAGAAGGCTGTTGATTCTGGTCTTCTATACTATCTCCGATCCGACCAGACACAGGGTATTGTGGTTCAAAGATCTGACTTAACTGGGCTTATAATGCGGCGAAATGAACTAGCAAGTGATCTTCTTAAGGCATTAACTTTGCAACAACTGCCTCCAATGTTACAGAGTCCTAGCATTTGCAAAGGTTGTCGCCATCTTAATGTGTGTAGCATTTATCATAAGGCACATGGTGGAAGCACAGAGAGCAGTGGGTTGGGAGAAGCTTTTGATTCTCTTAGTAATCACATGACATCTTCACATTCTAAGTTTCTCTGCCGTTGGGATCGCTTGATTGACTTAGAAGCTAAAGAGACTGAGCTTTTAAAGAAAGGGGTGTTGCAATCACATAGATTAAACAGTGGTGGCCTTTCTTCTATTGTTCTTGATGCTTCACAAGGAATACCTCATCAGAAATCTCTCAATGATAATAAATTCGTTTATCATTTCATACAACAAGATTCTTCTTCTAGCCTCTCTGGAGTTTTTGATGCGTCTTCTAGTGCCTCGTTGAAAAATGATTTAGATTTCACACTTAGAAGTGGAGATCATGTGATACTGAGTAATCAATCTAGCCATCAAATTATTGCTAAAGGGGTGATATCTGATATTAGTCCGATCCATGTATCTGTTTCCTTTTCCAAGCGTTTACGAATTCCTGGGAGTTCTTCCACTGCACATGATCTCAGTCAGCAGGTTTGGAGAATTGATAAGGATGAATATGTGACTTCATTTGCTATTATGAGGTTTAATCTTGTACAGCTTTTTCTACAAAATGATCAAAGTGCTCATCTGCGGAGGATGATTGTTGATCTTGAGGCTCCTAGATTTGACAGTGGATCTTTAGTTAGTCAGGATCCAGCGATATCCTATGTTTGGTCAGAGAAGAGTTTGAATGATGACCAACGTGGAGCAATTCTCAAGATACTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACATCCACATTGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGGACATCCATTTTGCTAACTGCGTATACAAATTCTGCTGTCGATAATTTACTCATCAAATTAAAAGCACAGGGGATTGATTTTGTACGAATTGGAAGACATGAAGTAGTGAATGAGGAGGTTAGAGAACACTGCCTCTCAGCAATGAATGTACAAGGTGTTGAAGATATCAAAATAAGGTTGGAACAAGTCAAAGTTGTTGCAGTTACTTGTCTCGGCATTTCTAGTCCCTTGCTTGCCAACACGAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGTCCTCTAATATTTGCTTCGACGTTTGTACTTGTTGGGGATCATTATCAACTACCACCACTTGTTCAGAGTGCAGAGGCCCGAGAGAATGGCATGGGCATAAGTTTGTTCTGTAGGCTCTCAGAAGCACATCCAGAGGCTATTTCAGCTTTGCAGAGTCAGTATCGAATGTGTCAGGACATTATGGACCTTTCCAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATTTGAGGTAGCTAACTCAAAACTTGAGTTTTCAGGCTTAAACTGTGATTTGCCTTGGCTAGAAGATGTTTTGAATCCTCGAAGACCTGTTATATTTATTGACACTGACAAGTTGCCTGCTTTAGAGGCAAGAGATCAGAAGATTGTAAATAACCCTATTGAAGCTCAGATAATTGCTGAGGTTGCAAAGGAATTGGTAAAGAATGGAATCGGAAGTGAACACATTGGCATTATTACTCCCTATAATTCACAGGCAAACCTCATCCGGAATGCTGCTTCCATGACTTCCTTGGAGATACATACCATAGACAAATACCAGGGTAGAGATAAAGACTGTATATTAGTATCTTTTGTAAGGTCTACCGAAAACCCGACAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGCGCTAAGAAAAAGTTGATCATGGTTGGATCTCGGAGAACTCTTCTTAGGGTTCCTCTATTGAAACTTCTCATTAAGAAGGTTGAGGAACAATCTGGAATTTTAACTGTGACTAAGAAGGATATCTATCGAAAAAGTGAGCTCAAGAGATGTTCTCAAATGAGATGA
>Glyma06g46721.1 sequence type=predicted peptide gene model=Glyma06g46721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPRKKKLNLQQQQQQQQQQPPSKFGIQHFFERASQKQQHLQPHTTTTTTTANAPPPEEQQPPNEVSPQTRFKFSPGMLVKQSQDEVVDEVTWKISPVNERLQAVSKYTPEVIKALAASSKINLSPIRSSGNKETCLDKVITSPTPKVPLSFKRISSARDVSGQSPFRTPPSYRPDKVQRVKDIERIRPCDNLLLRQNKKALLELLDQVEDAIAVDDVTVCNNNTYSFKVPQDLIANELPVKVNPTVERTKSDIPKEVVDVFSSNYLVLEVSELRSADSSDAPCSSYKVLRLLNEQTGEERAVNLHNEWFDSVIAPGDTVHIIGQFDLGGNCDIDHNKNFLIVHPDILVSGTRVAASLSCPRRTVLDERLKNNDYSIIALTGTLLHQIFQAGLTKENPTVNFMEDYAEVVLQRNIESLYACGVNENDVRKTLRDAIPRILSWIKQFKNTKERKDLSVNFGFDDEPKNVGISEVIDIEEMAWAPKYGLKGMIDASVRVKIQSQKDDPEEKIMPLEFKTGKAPYSQSSVEHRAQVILYTLLMSERYQKAVDSGLLYYLRSDQTQGIVVQRSDLTGLIMRRNELASDLLKALTLQQLPPMLQSPSICKGCRHLNVCSIYHKAHGGSTESSGLGEAFDSLSNHMTSSHSKFLCRWDRLIDLEAKETELLKKGVLQSHRLNSGGLSSIVLDASQGIPHQKSLNDNKFVYHFIQQDSSSSLSGVFDASSSASLKNDLDFTLRSGDHVILSNQSSHQIIAKGVISDISPIHVSVSFSKRLRIPGSSSTAHDLSQQVWRIDKDEYVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSLVSQDPAISYVWSEKSLNDDQRGAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEVVNEEVREHCLSAMNVQGVEDIKIRLEQVKVVAVTCLGISSPLLANTRFDVCIMDEAGQTTLPVSLGPLIFASTFVLVGDHYQLPPLVQSAEARENGMGISLFCRLSEAHPEAISALQSQYRMCQDIMDLSNALIYGDRLRCGSFEVANSKLEFSGLNCDLPWLEDVLNPRRPVIFIDTDKLPALEARDQKIVNNPIEAQIIAEVAKELVKNGIGSEHIGIITPYNSQANLIRNAASMTSLEIHTIDKYQGRDKDCILVSFVRSTENPTSCAASLLGDWHRINVALTRAKKKLIMVGSRRTLLRVPLLKLLIKKVEEQSGILTVTKKDIYRKSELKRCSQMR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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