Glyma06g46710 - SoyBase

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Report for Sequence Feature Glyma06g46710

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49279617
stop:	49283583
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g46710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44580	AT	Annotation by Michelle Graham. TAIR10: zinc ion binding \| chr2:18402081-18403412 REVERSE LENGTH=386	SoyBase	E_val: 3.00E-156	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0798	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13395	Panther	SISTER CHROMATID COHESION PROTEIN DCC1-RELATED	JGI		ISS
PTHR13395:SF6	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF09724	PFAM	Uncharacterized conserved protein (DUF2036)	JGI		ISS
UniRef100_B9SKI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKI3_RICCO	SoyBase	E_val: 3.00E-179	ISS
UniRef100_I1KFJ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFJ4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g46710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g46710

Paralog	Evidence	Comments
Glyma04g15890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g46710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g310400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g46710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g46710

Limit To All Plant Sequences

>Glyma06g46710.2   sequence type=transcript   gene model=Glyma06g46710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTCTTAAATATCAGCCCATTTTGGGCGGGAAGGGTTACCCTCTTCTCTCCAGTCCGAAGAGTCGCATTCGAATTGCAAGAAATCAAAGAAGAACTAATCAATAACACGAATAATTCAAGTGAGAGGGAGAAATGGAATTGCCTCCGCAGTCGGGTTCAATAGGGGCAGAAGCACTAAAACATATAGCTCCTGGATCATCAATTTCTGTTGCATATCACTCATCTTTTGGACCATATGAAGACCTCCTCTTTCTAGAGCTTGATGAGAAACTTCTCCCAGATGTTCTGAATGAAAGGGTGGTCTTGAGAGGACAGCCTGACGAAGATGCAGTTCTTTGTACTCAATCCAAGACATACGCTATGAAGTTTGTTGGAACTTCCAATTCTGTTCTGCTTGTACCACCTGCAAATCATTCAGAATATTATGAAAATCAACTAAAGAATGATAGTAATAGTGATGAAGAGAAAGTTGTTGCACCTGTACTCAAAGTTGTATCTGGTAATATGGAGCTTATTGAGACAGCCCCCAGACTTGATAAGCTTAAATCACTTCTGTCAGAAAAACCTTACAAATTGGAGGAGGATGACATGGGAAATTTAGAAGAGAATCAGGAATCTAGAATAGGATTATATAACTGGAATGATCTAGTAGACAATATTCAAGCTAGTGATGAGGAATTATTGTCCGGACTGCAGGCTCTTTCGGCACTGGAGATTTATGGGTATTGGAGATTAGTTGACGGGAGTTACATGGACATGATTCTGGGAATGATTTTGAAAAATGCAGTGTTGAATGACTGGTCACTTAATGCTTTAAATGAAGATGAAGTTGTGAGTACACTGGAATCAGATGGATTTCCTGGGGTGCTTGCTAGGCATTGTTTGAATGTATATGGTAACAGAGTAAATGAGTGCATGCCTAGCTTTGTCTGGAAGTTGGATGAGAAGCGAGTATGCATACATTTTGCAAGAGACATCCTAAAAGGGGGTAAGAGGAAGTTAGAGAGTTTCATGGATGAATGGAGGCAGAAGATTCCAGACGGAATGCAGCCCACTTTTGATCTTGTGGAAGGAGAGGTATTAACAGAGAAAATTGGAGTTGAAACATGGGTCCACGCCTTCAGTGTCGCTTCTTTGCCTTCCACTCCAGCTGAGCGTTTCTCTATTCTTTTCAGAGAGAGGCCAAAATGGGAATGGAAAGATCTTCAACCCTATATCAGAGATCTGAAGTTACCGGGTCTTTCTTCAGAAGGTTTGCTACTCAAATACACTCGAAGGACACAACCATCAGCTGACGCAGAACCAGTTTTCAGTGCAAGATAGCAAGAAAAGAGCTTCCGCATATGCTGTAACTGTGTGAGTTGGAAAAGCATAACATGTTTTTGTAATCAAAAGCAGAATTAGATCGAAAGCTTTACATTATACCCATTGGTTAGAACTTTTTGTGCTCGGTTCTGCATCTCAAGAGCTTCAGTTGGGCAATTGAAATTTTGTGGGACAGGTAATCGAAAACAAAGTGATGCTTATTCAGGATTTTCAGATCCAAAAGACCATCAGAGGTGGGAGTTGGTTCAAATGATAGGCACTTCTTCCTTTCTTCTCCTATTTATGCCTGTTTAAAGTCTTTTGGACTATTAGAGATCCTACTCGAATCTTGTGGTCAATCCTATTTCCAATAGGACTAGATGATAATTGAATCCAATTTTTTCCATAATTTTTGTATTGATAATAGTGTGAAAAAAAAGTCTAATTTCAAGAAGTTGTTTAAAAATAGTGGCGTTAGATTTCTTGACCCTTTGCCTTAGGAATAATTAGTTCTTGATTTCTTGATTGGGTGTCTT

Coding sequences of Glyma06g46710

Limit To All Plant Sequences

>Glyma06g46710.1   sequence type=CDS   gene model=Glyma06g46710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGCCTCCGCAGTCGGGTTCAATAGGGGCAGAAGCACTAAAACATATAGCTCCTGGATCATCAATTTCTGTTGCATATCACTCATCTTTTGGACCATATGAAGACCTCCTCTTTCTAGAGCTTGATGAGAAACTTCTCCCAGATGTTCTGAATGAAAGGGTGGTCTTGAGAGGACAGCCTGACGAAGATGCAGTTCTTTGTACTCAATCCAAGACATACGCTATGAAGTTTGTTGGAACTTCCAATTCTGTTCTGCTTGTACCACCTGCAAATCATTCAGAATATTATGAAAATCAACTAAAGAATGATAGTAATAGTGATGAAGAGAAAGTTGTTGCACCTGTACTCAAAGTTGTATCTGGTAATATGGAGCTTATTGAGACAGCCCCCAGACTTGATAAGCTTAAATCACTTCTGTCAGAAAAACCTTACAAATTGGAGGAGGATGACATGGGAAATTTAGAAGAGAATCAGGAATCTAGAATAGGATTATATAACTGGAATGATCTAGTAGACAATATTCAAGCTAGTGATGAGGAATTATTGTCCGGACTGCAGGCTCTTTCGGCACTGGAGATTTATGGGTATTGGAGATTAGTTGACGGGAGTTACATGGACATGATTCTGGGAATGATTTTGAAAAATGCAGTGTTGAATGACTGGTCACTTAATGCTTTAAATGAAGATGAAGTTGTGAGTACACTGGAATCAGATGGATTTCCTGGGGTGCTTGCTAGGCATTGTTTGAATGTATATGGTAACAGAGTAAATGAGTGCATGCCTAGCTTTGTCTGGAAGTTGGATGAGAAGCGAGTATGCATACATTTTGCAAGAGACATCCTAAAAGGGGGTAAGAGGAAGTTAGAGAGTTTCATGGATGAATGGAGGCAGAAGATTCCAGACGGAATGCAGCCCACTTTTGATCTTGTGGAAGGAGAGGTATTAACAGAGAAAATTGGAGTTGAAACATGGGTCCACGCCTTCAGTGTCGCTTCTTTGCCTTCCACTCCAGCTGAGCGTTTCTCTATTCTTTTCAGAGAGAGGCCAAAATGGGAATGGAAAGATCTTCAACCCTATATCAGAGATCTGAAGTTACCGGGTCTTTCTTCAGAAGGTTTGCTACTCAAATACACTCGAAGGACACAACCATCAGCTGACGCAGAACCAGTTTTCAGTGCAAGATAG

>Glyma06g46710.2   sequence type=CDS   gene model=Glyma06g46710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGCCTCCGCAGTCGGGTTCAATAGGGGCAGAAGCACTAAAACATATAGCTCCTGGATCATCAATTTCTGTTGCATATCACTCATCTTTTGGACCATATGAAGACCTCCTCTTTCTAGAGCTTGATGAGAAACTTCTCCCAGATGTTCTGAATGAAAGGGTGGTCTTGAGAGGACAGCCTGACGAAGATGCAGTTCTTTGTACTCAATCCAAGACATACGCTATGAAGTTTGTTGGAACTTCCAATTCTGTTCTGCTTGTACCACCTGCAAATCATTCAGAATATTATGAAAATCAACTAAAGAATGATAGTAATAGTGATGAAGAGAAAGTTGTTGCACCTGTACTCAAAGTTGTATCTGGTAATATGGAGCTTATTGAGACAGCCCCCAGACTTGATAAGCTTAAATCACTTCTGTCAGAAAAACCTTACAAATTGGAGGAGGATGACATGGGAAATTTAGAAGAGAATCAGGAATCTAGAATAGGATTATATAACTGGAATGATCTAGTAGACAATATTCAAGCTAGTGATGAGGAATTATTGTCCGGACTGCAGGCTCTTTCGGCACTGGAGATTTATGGGTATTGGAGATTAGTTGACGGGAGTTACATGGACATGATTCTGGGAATGATTTTGAAAAATGCAGTGTTGAATGACTGGTCACTTAATGCTTTAAATGAAGATGAAGTTGTGAGTACACTGGAATCAGATGGATTTCCTGGGGTGCTTGCTAGGCATTGTTTGAATGTATATGGTAACAGAGTAAATGAGTGCATGCCTAGCTTTGTCTGGAAGTTGGATGAGAAGCGAGTATGCATACATTTTGCAAGAGACATCCTAAAAGGGGGTAAGAGGAAGTTAGAGAGTTTCATGGATGAATGGAGGCAGAAGATTCCAGACGGAATGCAGCCCACTTTTGATCTTGTGGAAGGAGAGGTATTAACAGAGAAAATTGGAGTTGAAACATGGGTCCACGCCTTCAGTGTCGCTTCTTTGCCTTCCACTCCAGCTGAGCGTTTCTCTATTCTTTTCAGAGAGAGGCCAAAATGGGAATGGAAAGATCTTCAACCCTATATCAGAGATCTGAAGTTACCGGGTCTTTCTTCAGAAGGTTTGCTACTCAAATACACTCGAAGGACACAACCATCAGCTGACGCAGAACCAGTTTTCAGTGCAAGATAG

Predicted protein sequences of Glyma06g46710

Limit To All Plant Sequences

>Glyma06g46710.1   sequence type=predicted peptide   gene model=Glyma06g46710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELPPQSGSIGAEALKHIAPGSSISVAYHSSFGPYEDLLFLELDEKLLPDVLNERVVLRGQPDEDAVLCTQSKTYAMKFVGTSNSVLLVPPANHSEYYENQLKNDSNSDEEKVVAPVLKVVSGNMELIETAPRLDKLKSLLSEKPYKLEEDDMGNLEENQESRIGLYNWNDLVDNIQASDEELLSGLQALSALEIYGYWRLVDGSYMDMILGMILKNAVLNDWSLNALNEDEVVSTLESDGFPGVLARHCLNVYGNRVNECMPSFVWKLDEKRVCIHFARDILKGGKRKLESFMDEWRQKIPDGMQPTFDLVEGEVLTEKIGVETWVHAFSVASLPSTPAERFSILFRERPKWEWKDLQPYIRDLKLPGLSSEGLLLKYTRRTQPSADAEPVFSAR*

>Glyma06g46710.2   sequence type=predicted peptide   gene model=Glyma06g46710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELPPQSGSIGAEALKHIAPGSSISVAYHSSFGPYEDLLFLELDEKLLPDVLNERVVLRGQPDEDAVLCTQSKTYAMKFVGTSNSVLLVPPANHSEYYENQLKNDSNSDEEKVVAPVLKVVSGNMELIETAPRLDKLKSLLSEKPYKLEEDDMGNLEENQESRIGLYNWNDLVDNIQASDEELLSGLQALSALEIYGYWRLVDGSYMDMILGMILKNAVLNDWSLNALNEDEVVSTLESDGFPGVLARHCLNVYGNRVNECMPSFVWKLDEKRVCIHFARDILKGGKRKLESFMDEWRQKIPDGMQPTFDLVEGEVLTEKIGVETWVHAFSVASLPSTPAERFSILFRERPKWEWKDLQPYIRDLKLPGLSSEGLLLKYTRRTQPSADAEPVFSAR*

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