Glyma06g46701 - SoyBase

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Report for Sequence Feature Glyma06g46701

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49276311
stop:	49277786
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g46701

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF03760	PFAM	Late embryogenesis abundant (LEA) group 1	JGI		ISS
UniRef100_D7U5S7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=D7U5S7_VITVI	SoyBase	E_val: 2.00E-17	ISS
UniRef100_Q39138	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LEA protein Le25 homolog n=1 Tax=Arabidopsis thaliana RepID=Q39138_ARATH	SoyBase	E_val: 4.00E-06	ISS

Expression Patterns of Glyma06g46701

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g46701 not represented in the dataset	Glyma06g46701 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g46701

Paralog	Evidence	Comments
Glyma04g15911	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g46701 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g310300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g46701

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g46701

Limit To All Plant Sequences

>Glyma06g46701.1   sequence type=CDS   gene model=Glyma06g46701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCTGTGAAGGAAAAGCTAAAAGATTTAAATGCTGCGCGTAAGGCCAAGGCTGAAGCAAGGGCCGAAGAAAAGGCTGAGAAAGAGATCGCTGATGCCAGAAAGAATGTTGCTCACGAGGTTAGGTTGGCAAAAGAAGCTGAAGCAGAAATGGATATACACGTGGAAAAAGCAGGAAAAATAGCTGAGAAAGAAATATCAAAGCATGCATCTAAGAACCCTAATGTTGGTTATAGCAACATGAATACTACAGATCATGCTATGTTGGAAGCAGCAAATGGACCCGCCTCTACAATTAACTGA

Predicted protein sequences of Glyma06g46701

Limit To All Plant Sequences

>Glyma06g46701.1   sequence type=predicted peptide   gene model=Glyma06g46701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQAVKEKLKDLNAARKAKAEARAEEKAEKEIADARKNVAHEVRLAKEAEAEMDIHVEKAGKIAEKEISKHASKNPNVGYSNMNTTDHAMLEAANGPASTIN*

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