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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52600 | AT | Annotation by Michelle Graham. TAIR10: Peptidase S24/S26A/S26B/S26C family protein | chr1:19590612-19592486 FORWARD LENGTH=180 | SoyBase | E_val: 1.00E-123 | ISS |
| GO:0006465 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal peptide processing | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| KOG3342 | KOG | Signal peptidase I | JGI | ISS | |
| PTHR10806 | Panther | PROTEASE FAMILY S26 MICROSOMAL SIGNAL PEPTIDASE SUBUNIT SPC18,21/SEC11(YEAST) | JGI | ISS | |
| PF00717 | PFAM | Peptidase S24-like | JGI | ISS | |
| UniRef100_B9RV45 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Microsomal signal peptidase 18 kDa subunit, putative n=1 Tax=Ricinus communis RepID=B9RV45_RICCO | SoyBase | E_val: 5.00E-123 | ISS |
| UniRef100_I1KFJ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFJ2_SOYBN | SoyBase | E_val: 8.00E-126 | ISS |
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Glyma06g46690 not represented in the dataset |
Glyma06g46690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g310200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g46690.2 sequence type=transcript gene model=Glyma06g46690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGTAATTGAATTGGTTTTTGGTTGATAACTTTGTATATGGTATGCTGATTTTGCTATATGTGCTGTTGTCAGGCATGATTGTTACGTCTGCACTGATAATATGGAAGGCATTGATGTGCGTTACTGGCAGTGAATCTCCCGTTGTTGTTGTTCTTTCTGGAAGCATGGAACCCGGATTCAAGCGGGGAGACATCTTGTTCTTGCACATGAGTAAAGATCCTATTCGGGCAGGGGAGATTGTTGTGTTTAATGTTGATGGACGTGAGATTCCAATTGTTCATCGTGTAATTAAGGTACATGAAAGGGAAGATACTGGGGAGGTTGATGTTCTCACAAAAGGAGACAACAATTATGGGGATGACAGGCTACTGTATGCTCATGGTCAACTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCCGTCGGGTTCTTACCATACGTAGGCTGGGTGACCATCATTATGACTGAAAAGCCTATTATCAAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCGAAAGATTAAATGATGAATATGAAGTCAAAACTGCGGTCTAACTTCGGATGGTAGGGTGAGCAGAATATAATGGTAAGATTAAAAGATGAATCTGAAATCATTTTGTACCATTCATAGTATATGGGGGACAATATGATGTTAAGGATTTATGCAAAATAGTTGAATTTTGGTATATTCTTACTTCTTCCTACTCCTTGATGAGTTGGTATCTGACTGAAACCCCTCTTCCTTTGCATTTTGAGTGAAACCCCCCTTCCTTTATATTTTAATTTGGTGCAGTTTAAGATTAAGCATATAAATCAGCTGTTCCTTATCCACAATGCCTTCTGCTGCCTTTACAAGACTACTTTATTTCTTTGCGACAAATTTTAGCTTGCTGATGCGTTATAAATATTGATATAATTATTAAAATTTTGTCTACATCGATCCTTCATGAA
>Glyma06g46690.1 sequence type=CDS gene model=Glyma06g46690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGGATCGGTGAGACTGTTGATTCCATCAAATCTCTTCAGATCCGCCAGGTCCTCACCCAGGCTGTGAGCCTAGGCATGATTGTTACGTCTGCACTGATAATATGGAAGGCATTGATGTGCGTTACTGGCAGTGAATCTCCCGTTGTTGTTGTTCTTTCTGGAAGCATGGAACCCGGATTCAAGCGGGGAGACATCTTGTTCTTGCACATGAGTAAAGATCCTATTCGGGCAGGGGAGATTGTTGTGTTTAATGTTGATGGACGTGAGATTCCAATTGTTCATCGTGTAATTAAGGTACATGAAAGGGAAGATACTGGGGAGGTTGATGTTCTCACAAAAGGAGACAACAATTATGGGGATGACAGGCTACTGTATGCTCATGGTCAACTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCCGTCGGGTTCTTACCATACGTAGGCTGGGTGACCATCATTATGACTGAAAAGCCTATTATCAAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCGAAAGATTAA >Glyma06g46690.2 sequence type=CDS gene model=Glyma06g46690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGATTTTGCTATATGTGCTGTTGTCAGGCATGATTGTTACGTCTGCACTGATAATATGGAAGGCATTGATGTGCGTTACTGGCAGTGAATCTCCCGTTGTTGTTGTTCTTTCTGGAAGCATGGAACCCGGATTCAAGCGGGGAGACATCTTGTTCTTGCACATGAGTAAAGATCCTATTCGGGCAGGGGAGATTGTTGTGTTTAATGTTGATGGACGTGAGATTCCAATTGTTCATCGTGTAATTAAGGTACATGAAAGGGAAGATACTGGGGAGGTTGATGTTCTCACAAAAGGAGACAACAATTATGGGGATGACAGGCTACTGTATGCTCATGGTCAACTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCCGTCGGGTTCTTACCATACGTAGGCTGGGTGACCATCATTATGACTGAAAAGCCTATTATCAAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCGAAAGATTAA
>Glyma06g46690.1 sequence type=predicted peptide gene model=Glyma06g46690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWIGETVDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD* >Glyma06g46690.2 sequence type=predicted peptide gene model=Glyma06g46690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLILLYVLLSGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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