Glyma06g46680 - SoyBase

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Report for Sequence Feature Glyma06g46680

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49266700
stop:	49268622
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g46680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68620	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr1:25766018-25767028 FORWARD LENGTH=336	SoyBase	E_val: 3.00E-53	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1515	KOG	Arylacetamide deacetylase	JGI		ISS
PTHR23024	Panther	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	JGI		ISS
PTHR23024:SF10	Panther	CARBOXYLESTERASE-RELATED	JGI		ISS
PF07859	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_D5LG62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HSR203J protein n=1 Tax=Arachis hypogaea RepID=D5LG62_ARAHY	SoyBase	E_val: 0	ISS
UniRef100_I1KFJ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFJ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g46680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g46680

Paralog	Evidence	Comments
Glyma04g15930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g46680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g310100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g46680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g46680

Limit To All Plant Sequences

>Glyma06g46680.1   sequence type=CDS   gene model=Glyma06g46680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCCAAGAAAAGAAACTAGTTGACGAGGTGTCCGGTTGGCTCAAAATTTATGACGACGGTTCAGTGGACCGGACATGGTCCGGACCGGACCAATTCAAGTTCATGGCCGAACCGGCCCCTCCCCATGAACAATTCATAGACGGCGTTGCCATTCGCGACGTCGCCGTTACTCACGGTGGTGGCCAGAGTGGCCACCATGTCCGACTTTATCTGCCAGAGATAAAGCCGGAAGACAGCCAAAAACTACCAATTGTCCTCCATTTCCACGGCGGCGGGTTTTGCATAAGTGAACCGGACTGGTTCATGTACTACCAAGTCTACACCCGGTTCGCCCGGTCCACTCGGTCCATCGTGGTTTCCCCGTTCCTCCGCCGTGCCCCAGAGCACCGCCTCCCCGCCGCCATCGATGACGGCTTTGACACCCTCCTCTGGCTCCAAACCGTGGCCCGGTCCGGTTCACTCGAGCCGTGGCTCGAGCAACACGGTGACTTCAACCGGGTTTTCCTCATAGGAGACAGTTCTGGCGGAAACTCGGTGCATGAGGTGGCCGCGAGGGCCGGTTCGGCGGACCTAAGCCCGGTCCGGGTCGCGGGGGCAATTCCGGTTCACCCCGGTTTTGTCCGGTCCAACCGGAGCCGGTCCGAGATGGAAATGCCACAGACACCGTTTTTAACGTTGGACATGCTGGACAAGTTCTTAGCCTTGGCGCTTCCTGTTGGGGCCACCAAGGACCACCCCTTTACGTGCCCGATGGGTGAGGCGGCACCGCCACTCGAAGGGCTGAAACTGCCTCCGGTGCTGCTATGCGTGGCGGAGATGGACTTGGTGAGGGACACGGAGATGGAGTACTATGAGGCCATGAAGAAGGCCAACAAGGATGTGGAACTTTATGTTAGCAAAGGGATGACACATAGTTTTTATCTGAATAAGATTGCTGTGGATATGGACCCCAATGTTAGTGCTCAAACCGATGCTCTCATTTCTAGGATCAAGGAGTTCATTGAGAAGCACTGA

Predicted protein sequences of Glyma06g46680

Limit To All Plant Sequences

>Glyma06g46680.1   sequence type=predicted peptide   gene model=Glyma06g46680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQEKKLVDEVSGWLKIYDDGSVDRTWSGPDQFKFMAEPAPPHEQFIDGVAIRDVAVTHGGGQSGHHVRLYLPEIKPEDSQKLPIVLHFHGGGFCISEPDWFMYYQVYTRFARSTRSIVVSPFLRRAPEHRLPAAIDDGFDTLLWLQTVARSGSLEPWLEQHGDFNRVFLIGDSSGGNSVHEVAARAGSADLSPVRVAGAIPVHPGFVRSNRSRSEMEMPQTPFLTLDMLDKFLALALPVGATKDHPFTCPMGEAAPPLEGLKLPPVLLCVAEMDLVRDTEMEYYEAMKKANKDVELYVSKGMTHSFYLNKIAVDMDPNVSAQTDALISRIKEFIEKH*

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