Glyma06g46620 - SoyBase

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Report for Sequence Feature Glyma06g46620

Feature Type:	gene_model
Chromosome:	Gm06
Start:	49200204
stop:	49203847
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g46620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08845	AT	Annotation by Michelle Graham. TAIR10: Ribosomal L18p/L5e family protein \| chr1:2839855-2840955 FORWARD LENGTH=189	SoyBase	E_val: 1.00E-102	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR12899	Panther	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	JGI		ISS
PTHR12899:SF2	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00861	PFAM	Ribosomal L18p/L5e family	JGI		ISS
UniRef100_B9T8N7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Structural constituent of ribosome, putative n=1 Tax=Ricinus communis RepID=B9T8N7_RICCO	SoyBase	E_val: 2.00E-105	ISS
UniRef100_I1KFI3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KFI3_SOYBN	SoyBase	E_val: 2.00E-148	ISS

Expression Patterns of Glyma06g46620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g46620

Paralog	Evidence	Comments
Glyma04g14470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g46620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g309500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g46620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g46620

Limit To All Plant Sequences

>Glyma06g46620.2   sequence type=transcript   gene model=Glyma06g46620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCAAAGATTCCAATTATTATTAAAGATGCTCTTAATATCCAAAACAAATCAATGATCCATTCAAGTCTAATACTATTAAATGGCACTCATCAATCATCACTTGCACAAGAATATTACACTTTGAGTGCCATTATTGGGTCCTGGGTTCGAGACAAGACACCCACATTCCCTAAACCCTTCCAAATCCAATTCAACAACAAAAATACGCAACAGTCACCGGTTCTCTTCACCTAATCTGAATCACACTCTCTTCGTTGCTTCAGTTCATCTCCTCATATCTACAACTCTCCCTCATTCTCTGGTTCTTTTCTCACTCCAAACTGAACTGCAAAATTTTGGTTTTGTTCACTCAATACAGGGTGCGATTTGCTTCCATTTTCCAGTCATTCCCATACTCCTTAGGCTATTGTATGCTTCTACTAATAAGGAGGAGTTGTTATTGGGTTCTGAGAAACATGTTGAAACAAGTAATTGGCAGAATCTGTAGAACCGATGTTTATGCTTGTGAAGGAAACAGAGTTTTGCCTTGGATTTATGTGCCTTCATGCTTTTTCCACCATGGACAAGCGCACATGGCACCTAGAAGCTTTTTTGGGGTAGAGGATTTCCTTGACGATGACAATAGCCGACCTTACACATACCAAAAAGGGAAGAAGTCAAAGAATCCCAATAAGCACATATCATTCAAACAAAGAACAATTGCCTACATGGAGCCTTTTACACTTGATGTGTTTATCTCGAAACGTTTTGTATCAGCTTCACTCACTCATAGGGTAACAAGCAAACAGGTTGCAGTTGCCGGGACCAACTCCAAGGACATAAAAGCTGTTCTTAGGTCTCGTTCCGACATACCGGCATGCATAGCCATTGGTAGGATTTTAGCTGAAAGAGCAAAAGAAGCTGATGTTTACACTGGTTCTTATACTCCAAGGGATAGGGACAAGTTTGAAGGGAAAATCAGAGCTGTAGTTCAATCACTTATTGATAATGGGATTGATATCAAGGTTTATCTTGATTGAGTTGAGTCACTCAAGTTTTTGGGACTATCAGTTTAGCTGTTGATATTTCGGTTCGCCTTGTGTGTTTGAACATGTCCATTTAGTTTGGTTTTTATGATAATGGGAAAATATCATTATTAGAATTACAGATTTCGTAATTTACTTTTATGAATGAGTTATGTTGTCGTAATTGTAGTTAGTTATTCGTTTTAATTAATGTTAAATAATAATCGTGTTACAAAT

Coding sequences of Glyma06g46620

Limit To All Plant Sequences

>Glyma06g46620.1   sequence type=CDS   gene model=Glyma06g46620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTACTAATAAGGAGGAGTTGTTATTGGGTTCTGAGAAACATGTTGAAACAAGTAATTGGCAGAATCTGTAGAACCGATGTTTATGCTTGTGAAGGAAACAGAGTTTTGCCTTGGATTTATGTGCCTTCATGCTTTTTCCACCATGGACAAGCGCACATGGCACCTAGAAGCTTTTTTGGGGTAGAGGATTTCCTTGACGATGACAATAGCCGACCTTACACATACCAAAAAGGGAAGAAGTCAAAGAATCCCAATAAGCACATATCATTCAAACAAAGAACAATTGCCTACATGGAGCCTTTTACACTTGATGTGTTTATCTCGAAACGTTTTGTATCAGCTTCACTCACTCATAGGGTAACAAGCAAACAGGTTGCAGTTGCCGGGACCAACTCCAAGGACATAAAAGCTGTTCTTAGGTCTCGTTCCGACATACCGGCATGCATAGCCATTGGTAGGATTTTAGCTGAAAGAGCAAAAGAAGCTGATGTTTACACTGGTTCTTATACTCCAAGGGATAGGGACAAGTTTGAAGGGAAAATCAGAGCTGTAGTTCAATCACTTATTGATAATGGGATTGATATCAAGGTTTATCTTGATTGA

>Glyma06g46620.2   sequence type=CDS   gene model=Glyma06g46620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTACTAATAAGGAGGAGTTGTTATTGGGTTCTGAGAAACATGTTGAAACAAGTAATTGGCAGAATCTGTAGAACCGATGTTTATGCTTGTGAAGGAAACAGAGTTTTGCCTTGGATTTATGTGCCTTCATGCTTTTTCCACCATGGACAAGCGCACATGGCACCTAGAAGCTTTTTTGGGGTAGAGGATTTCCTTGACGATGACAATAGCCGACCTTACACATACCAAAAAGGGAAGAAGTCAAAGAATCCCAATAAGCACATATCATTCAAACAAAGAACAATTGCCTACATGGAGCCTTTTACACTTGATGTGTTTATCTCGAAACGTTTTGTATCAGCTTCACTCACTCATAGGGTAACAAGCAAACAGGTTGCAGTTGCCGGGACCAACTCCAAGGACATAAAAGCTGTTCTTAGGTCTCGTTCCGACATACCGGCATGCATAGCCATTGGTAGGATTTTAGCTGAAAGAGCAAAAGAAGCTGATGTTTACACTGGTTCTTATACTCCAAGGGATAGGGACAAGTTTGAAGGGAAAATCAGAGCTGTAGTTCAATCACTTATTGATAATGGGATTGATATCAAGGTTTATCTTGATTGA

Predicted protein sequences of Glyma06g46620

Limit To All Plant Sequences

>Glyma06g46620.1   sequence type=predicted peptide   gene model=Glyma06g46620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLIRRSCYWVLRNMLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGIDIKVYLD*

>Glyma06g46620.2   sequence type=predicted peptide   gene model=Glyma06g46620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLIRRSCYWVLRNMLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGIDIKVYLD*

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