SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06570 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:2008075-2011013 REVERSE LENGTH=329 | SoyBase | E_val: 1.00E-106 | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1515 | KOG | Arylacetamide deacetylase | JGI | ISS | |
| PTHR23024 | Panther | MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES | JGI | ISS | |
| PTHR23024:SF10 | Panther | CARBOXYLESTERASE-RELATED | JGI | ISS | |
| PF07859 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| UniRef100_B9SNK0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin receptor GID1, putative n=1 Tax=Ricinus communis RepID=B9SNK0_RICCO | SoyBase | E_val: 5.00E-176 | ISS |
| UniRef100_I1KFG5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFG5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma06g46520 not represented in the dataset |
Glyma06g46520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g10250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g308500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g46520.2 sequence type=transcript gene model=Glyma06g46520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGACAATGTCAAAACTAAAGACTAAAGAGCCGCACAAAACAACGTACACAGAAGAAGTTATCGACGATGACACACTCCACACAAGCATTTGAGCCTTTTGTGTTTGTTTTGTATGGCAAACAAATTAAACAAGCACAACGAGAAAACGCCATTCACATAACAATGCATATCCATTGTCATTGACTCATTCAATAACCTCTTTATATTCACAACTTTTCCTCACACAAAAAAAATAAATAGTGGACAAGGGATAAGAAAAACATGTCTGAGATATCGAACTCCAAAGCCACCGTGGTGGAAGATTGTCGTGGCGTTCTTCATGTCTATAACGACGGTTCCATAGTACGTTCTTCACGTCCAAGCTTCAACGTACCTATAAACGACGATGGCACCGTTTTGTGGAAAGATGTCGTTTTTGACACTGCACTTGATCTTCAGCTTCGGCTCTATAAGCCAGCCGACGACTCAGCCGGATCCAAGCTTCCCATTTTCATTTATATCCACGGTGGCGGCTTTTGCATCGGCTCGCGCACTTGGCCTAACTGTCAAAACTATTGTTTCCAGCTTACTTCTCGGCTTCGAGCCGTAGTTGTTGCCCCAGATTATCGGCTTGCTCCGGAGAATCGACTCCCCGATGCGATCGAGGATGGCTTTGAGGCTCTTAAGTGGCTTCAAACTCAAGCCGTGAGTGATGAGCCAGACCCGTGGCTCAGCCACGTGGCTGATTTTAGCCATGTGTACATTTCGGGTGACTCAGCTGGAGGGAACATAGCTCATCACTTAGCGGCTCGGCTTGGGTTTGGGTCTCCCGAGTTGGATCCGGTTCGGGTTAGGGGTTATGTTCTATTGGCCCCTTTCTTTGGTGGAACTATCCGAACCAAGTCAGAAGCTGAAGGACCAAAAGATGCTTTTCTCAATTTAGAACTTATTGATAGCCAGAGCCTTGAAGCAATTGATTTCGACCCAATTCTAGTGGTGGCTGGAGGGAGTGACTTGCTTAAAGATAGGGCAGAGGATTATGCAAAAAGGCTTAAGGAGTGGGGTAATAAAGATATAGAGTATGTAGAATTTGAAGGACAACAACATGGTTTCTTCACTATTTATCCCAACTCAGAACCATCAAACAAGTTGATGCTGATCATCAAACAATTCATAGAGAAGCATTTGGGGAAAGTTTGAAGGGCTTCAAACACTACTTGTCTAGCTACAACATGCATGTTTAATGTAGTAACTTTTGCTCTTGCATTTTTAACTATGTTTTAGGTACGAGTGATGACAAGGGAACAAAGTAACATTTCTAAGCATCAAGTATGCATTGCCCAAAAGCTGTGTTAAATTGCAATTGTAATAAATCTTTCCCCTTCGATGCTGATAATATTTCTTGCAATTTCTCTGAACCTGCTACAGAGCTAAAATTCCAAACTTTCAAGTAAGCAGTACCCAAAATCAGATTAGCAAACACAAATCATCAAAGAGGAGTGATACAGCAAACACCCTTCTTATCGTATCCCATCTATCACATCACATTATCTATTCTTGGTTAAAATTTACTGAATTTTTCTAAAATATATTTAGTCTTATAAAATGATTGAGTTGTGCTTTTAGTTCCTCT
>Glyma06g46520.1 sequence type=CDS gene model=Glyma06g46520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGAGATATCGAACTCCAAAGCCACCGTGGTGGAAGATTGTCGTGGCGTTCTTCATGTCTATAACGACGGTTCCATAGTACGTTCTTCACGTCCAAGCTTCAACGTACCTATAAACGACGATGGCACCGTTTTGTGGAAAGATGTCGTTTTTGACACTGCACTTGATCTTCAGCTTCGGCTCTATAAGCCAGCCGACGACTCAGCCGGATCCAAGCTTCCCATTTTCATTTATATCCACGGTGGCGGCTTTTGCATCGGCTCGCGCACTTGGCCTAACTGTCAAAACTATTGTTTCCAGCTTACTTCTCGGCTTCGAGCCGTAGTTGTTGCCCCAGATTATCGGCTTGCTCCGGAGAATCGACTCCCCGATGCGATCGAGGATGGCTTTGAGGCTCTTAAGTGGCTTCAAACTCAAGCCGTGAGTGATGAGCCAGACCCGTGGCTCAGCCACGTGGCTGATTTTAGCCATGTGTACATTTCGGGTGACTCAGCTGGAGGGAACATAGCTCATCACTTAGCGGCTCGGCTTGGGTTTGGGTCTCCCGAGTTGGATCCGGTTCGGGTTAGGGGTTATGTTCTATTGGCCCCTTTCTTTGGTGGAACTATCCGAACCAAGTCAGAAGCTGAAGGACCAAAAGATGCTTTTCTCAATTTAGAACTTATTGATAGGTTTTGGAGGCTTTCTATACCCATTGGGGAGACTACTGATCACCCTCTTGTGAATCCTTTTGGGCCTTATAGCCAGAGCCTTGAAGCAATTGATTTCGACCCAATTCTAGTGGTGGCTGGAGGGAGTGACTTGCTTAAAGATAGGGCAGAGGATTATGCAAAAAGGCTTAAGGAGTGGGGTAATAAAGATATAGAGTATGTAGAATTTGAAGGACAACAACATGGTTTCTTCACTATTTATCCCAACTCAGAACCATCAAACAAGTTGATGCTGATCATCAAACAATTCATAGAGAAGCATTTGGGGAAAGTTTGA >Glyma06g46520.2 sequence type=CDS gene model=Glyma06g46520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGAGATATCGAACTCCAAAGCCACCGTGGTGGAAGATTGTCGTGGCGTTCTTCATGTCTATAACGACGGTTCCATAGTACGTTCTTCACGTCCAAGCTTCAACGTACCTATAAACGACGATGGCACCGTTTTGTGGAAAGATGTCGTTTTTGACACTGCACTTGATCTTCAGCTTCGGCTCTATAAGCCAGCCGACGACTCAGCCGGATCCAAGCTTCCCATTTTCATTTATATCCACGGTGGCGGCTTTTGCATCGGCTCGCGCACTTGGCCTAACTGTCAAAACTATTGTTTCCAGCTTACTTCTCGGCTTCGAGCCGTAGTTGTTGCCCCAGATTATCGGCTTGCTCCGGAGAATCGACTCCCCGATGCGATCGAGGATGGCTTTGAGGCTCTTAAGTGGCTTCAAACTCAAGCCGTGAGTGATGAGCCAGACCCGTGGCTCAGCCACGTGGCTGATTTTAGCCATGTGTACATTTCGGGTGACTCAGCTGGAGGGAACATAGCTCATCACTTAGCGGCTCGGCTTGGGTTTGGGTCTCCCGAGTTGGATCCGGTTCGGGTTAGGGGTTATGTTCTATTGGCCCCTTTCTTTGGTGGAACTATCCGAACCAAGTCAGAAGCTGAAGGACCAAAAGATGCTTTTCTCAATTTAGAACTTATTGATAGCCAGAGCCTTGAAGCAATTGATTTCGACCCAATTCTAGTGGTGGCTGGAGGGAGTGACTTGCTTAAAGATAGGGCAGAGGATTATGCAAAAAGGCTTAAGGAGTGGGGTAATAAAGATATAGAGTATGTAGAATTTGAAGGACAACAACATGGTTTCTTCACTATTTATCCCAACTCAGAACCATCAAACAAGTTGATGCTGATCATCAAACAATTCATAGAGAAGCATTTGGGGAAAGTTTGA
>Glyma06g46520.1 sequence type=predicted peptide gene model=Glyma06g46520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEISNSKATVVEDCRGVLHVYNDGSIVRSSRPSFNVPINDDGTVLWKDVVFDTALDLQLRLYKPADDSAGSKLPIFIYIHGGGFCIGSRTWPNCQNYCFQLTSRLRAVVVAPDYRLAPENRLPDAIEDGFEALKWLQTQAVSDEPDPWLSHVADFSHVYISGDSAGGNIAHHLAARLGFGSPELDPVRVRGYVLLAPFFGGTIRTKSEAEGPKDAFLNLELIDRFWRLSIPIGETTDHPLVNPFGPYSQSLEAIDFDPILVVAGGSDLLKDRAEDYAKRLKEWGNKDIEYVEFEGQQHGFFTIYPNSEPSNKLMLIIKQFIEKHLGKV* >Glyma06g46520.2 sequence type=predicted peptide gene model=Glyma06g46520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEISNSKATVVEDCRGVLHVYNDGSIVRSSRPSFNVPINDDGTVLWKDVVFDTALDLQLRLYKPADDSAGSKLPIFIYIHGGGFCIGSRTWPNCQNYCFQLTSRLRAVVVAPDYRLAPENRLPDAIEDGFEALKWLQTQAVSDEPDPWLSHVADFSHVYISGDSAGGNIAHHLAARLGFGSPELDPVRVRGYVLLAPFFGGTIRTKSEAEGPKDAFLNLELIDSQSLEAIDFDPILVVAGGSDLLKDRAEDYAKRLKEWGNKDIEYVEFEGQQHGFFTIYPNSEPSNKLMLIIKQFIEKHLGKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
