Glyma06g46350 - SoyBase

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Report for Sequence Feature Glyma06g46350

Feature Type:	gene_model
Chromosome:	Gm06
Start:	48993920
stop:	48998920
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g46350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76160	AT	Annotation by Michelle Graham. TAIR10: SKU5 similar 5 \| chr1:28578211-28581020 REVERSE LENGTH=541	SoyBase	E_val: 0	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0052541	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1263	KOG	Multicopper oxidases	JGI		ISS
PTHR11709	Panther	MULTI-COPPER OXIDASE	JGI		ISS
PTHR11709:SF11	Panther	MULTICOPPER OXIDASE-RELATED	JGI		ISS
PF00394	PFAM	Multicopper oxidase	JGI		ISS
PF07731	PFAM	Multicopper oxidase	JGI		ISS
PF07732	PFAM	Multicopper oxidase	JGI		ISS
UniRef100_G7JDL2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: L-ascorbate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7JDL2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KFE9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KFE9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g46350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g46350

Paralog	Evidence	Comments
Glyma12g10420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g46350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g307100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g46350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g46350

Limit To All Plant Sequences

>Glyma06g46350.2   sequence type=transcript   gene model=Glyma06g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATAAAGGTACTGCATTGTTGGGTACAGCTCAATTATGTCACTGGCTACTATCTCTCACATCCACATGCAAATGCAAGAGGTGGTTCCCTTAATGATCCATTGCTTCTGTTAAAGAATCCTTTGGTTTCTCTCTCTACCGACATTATCTCCCTTTATATCAGTTGTCCTAGGCAGAGTTTCTAAAGCAAAAGAAAAAAAAAAGAAAGCAAAGGGTAGGCATTGACCCCTTTGCACAAAGGAAAAGAGGGGTGGTGTTGTGTTAAAAAAATATTGAACTTGGTTGGTTCTAAGTAGAAACAAAAATTGTCATTTTCCCATTTCTGCATTTTTGGTTTGGGAGAGGAGAAACCAAGAATTAAGAAATGGGTTGCTCCGTAAGAGTTTGTTGTGTCTTATTTTTGGTGTTGTTGGTGGCATGTGTTAGAGGGGAGGACCCTTATAGATTCTACACTTGGAATGTCACATATGGAGACATTTATCCACTTGGTGTTAAACAACAGGGTATTTTGATAAACTGGCAATTTCCAGGGCCACAAATTGAGGCTGTGACCAATGACAACTTGATTATCAATGTATACAACAGCTTGGACGAACCTTTCCTCTTATCTTGGAATGGAGTGCTGCAGAGGAGAAACTCGTGGCAGGATGGAGTGTATGGTACCAATTGTCCAATTCTACCAGGGCATAACTTCACTTATGTTCTTCAAGTGAAGGATCAGATAGGTAGCTACTTCTACTACCCTTCCCTTGCTTTTCACAAGGCAGCAGGAGGTTATGGTGGATTCAAAATTGCTAGTCGCCCCGGGATTCCAGTGCCTTTTCCTACTCCAGCAGGAGATTTCACCATATTGGCAGGAGACTGGTACAAGAGAAATCACACAGATTTGAGGGCAATTTTGGATGGTGGAAGTGACCTTCCCTTCCCTGATGGGATTATCATCAATGGTCGTGGTTCCAATGCTTACACATTCACAGTTGATCAAGGCAAGACATACAGATTCAGGATATCAAATGTAGGGCTCACCACTTCCATCAACTTTAGAATCCAAGGGCATAAAATGACAATTGTTGAGGTGGAAGGGACCCACACTCTCCAAAACGTTTATGACTCACTTGATGTTCATCTGGGGCAGACTTACTCTGTGTTGGTTACTGCTGATCAACCACCCCAAGACTACCTCATTGTCGTCACGACACGATTCACCTCCCAAGTGTTGAATGCTACCTCCATTTTTCGTTACAGTAACTCTGGTGGAGGTGTTACTGGCCTTTTCCCTTGGGGGCCAACTATTCAAGTTGATTGGTCTTTAAACCAAGCTCGCTCTCTTAGGAGGAATCTGACAGCAAGTGGGCCAAGACCTAATCCACAAGGATCATACCATTATGGTTTGATAAACACAACTCGTACAATTAGACTTCAAAATTCTGGTCCAGTTATCAATGGCAAACAGAGATATGCTGTCAATAGTGTGTCCTTCATACCTGCTGATACACCACTTAAACTGGCTGATTACTACAAGATCCAAGGGGTGTTCTCCCTTGGAAGTATCCCTGACTACCCCACTGGTAGTGGTGGCTACCTTCAAACTTCTGTCATGGAAGCCGATTTCCGAGGCTTTATAGAGGTTGTGTTTGAGAACACTGAAGACACTGTGGAGTCATGGCACGTTGATGGCCACAGCTTCTTTGTAGTAGGGTAAGATCACCTAACTCATTCCTTTCTGCTGCAAATTTGATACCAAACTGCATTGTATTACAGCCTTTTGATTCTACTAGCTTTCTGATTAGCTAGTTAATTACATGTTTAGTTAGTTACTAGTTCAATAAGCTTTATAAATGATGCATGTAGCACACTCATTTATATCT

Coding sequences of Glyma06g46350

Limit To All Plant Sequences

>Glyma06g46350.1   sequence type=CDS   gene model=Glyma06g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCTCCGTAAGAGTTTGTTGTGTCTTATTTTTGGTGTTGTTGGTGGCATGTGTTAGAGGGGAGGACCCTTATAGATTCTACACTTGGAATGTCACATATGGAGACATTTATCCACTTGGTGTTAAACAACAGGGTATTTTGATAAACTGGCAATTTCCAGGGCCACAAATTGAGGCTGTGACCAATGACAACTTGATTATCAATGTATACAACAGCTTGGACGAACCTTTCCTCTTATCTTGGAATGGAGTGCTGCAGAGGAGAAACTCGTGGCAGGATGGAGTGTATGGTACCAATTGTCCAATTCTACCAGGGCATAACTTCACTTATGTTCTTCAAGTGAAGGATCAGATAGGTAGCTACTTCTACTACCCTTCCCTTGCTTTTCACAAGGCAGCAGGAGGTTATGGTGGATTCAAAATTGCTAGTCGCCCCGGGATTCCAGTGCCTTTTCCTACTCCAGCAGGAGATTTCACCATATTGGCAGGAGACTGGTACAAGAGAAATCACACAGATTTGAGGGCAATTTTGGATGGTGGAAGTGACCTTCCCTTCCCTGATGGGATTATCATCAATGGTCGTGGTTCCAATGCTTACACATTCACAGTTGATCAAGGCAAGACATACAGATTCAGGATATCAAATGTAGGGCTCACCACTTCCATCAACTTTAGAATCCAAGGGCATAAAATGACAATTGTTGAGGTGGAAGGGACCCACACTCTCCAAAACGTTTATGACTCACTTGATGTTCATCTGGGGCAGACTTACTCTGTGTTGGTTACTGCTGATCAACCACCCCAAGACTACCTCATTGTCGTCACGACACGATTCACCTCCCAAGTGTTGAATGCTACCTCCATTTTTCGTTACAGTAACTCTGGTGGAGGTGTTACTGGCCTTTTCCCTTGGGGGCCAACTATTCAAGTTGATTGGTCTTTAAACCAAGCTCGCTCTCTTAGGAGGAATCTGACAGCAAGTGGGCCAAGACCTAATCCACAAGGATCATACCATTATGGTTTGATAAACACAACTCGTACAATTAGACTTCAAAATTCTGGTCCAGTTATCAATGGCAAACAGAGATATGCTGTCAATAGTGTGTCCTTCATACCTGCTGATACACCACTTAAACTGGCTGATTACTACAAGATCCAAGGGGTGTTCTCCCTTGGAAGTATCCCTGACTACCCCACTGGTAGTGGTGGCTACCTTCAAACTTCTGTCATGGAAGCCGATTTCCGAGGCTTTATAGAGGTTGTGTTTGAGAACACTGAAGACACTGTGGAGTCATGGCACGTTGATGGCCACAGCTTCTTTGTAGTAGGAATGGATGGAGGGCAATGGTCATCAGCAAGCAGGCTAAATTACAATTTAAGAGATACAGTTTCTCGTTCCACAGTTCAGGTGTATCCCAAGTCATGGACTGCAATTTACATGCCTTTGGATAATGTGGGAATGTGGAATGTGAGGTCTGAGAATTGGGTTCATCAGTATTTGGGCCAGCAATTTTATCTTAGAGTGTATTCCCCTGCAAATTCATGGAGAGATGAGTACCCAATTCCAAGCAATGCTATTCGGTGTGGCAAGGCTGTGGGACACTACTAA

>Glyma06g46350.2   sequence type=CDS   gene model=Glyma06g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCTCCGTAAGAGTTTGTTGTGTCTTATTTTTGGTGTTGTTGGTGGCATGTGTTAGAGGGGAGGACCCTTATAGATTCTACACTTGGAATGTCACATATGGAGACATTTATCCACTTGGTGTTAAACAACAGGGTATTTTGATAAACTGGCAATTTCCAGGGCCACAAATTGAGGCTGTGACCAATGACAACTTGATTATCAATGTATACAACAGCTTGGACGAACCTTTCCTCTTATCTTGGAATGGAGTGCTGCAGAGGAGAAACTCGTGGCAGGATGGAGTGTATGGTACCAATTGTCCAATTCTACCAGGGCATAACTTCACTTATGTTCTTCAAGTGAAGGATCAGATAGGTAGCTACTTCTACTACCCTTCCCTTGCTTTTCACAAGGCAGCAGGAGGTTATGGTGGATTCAAAATTGCTAGTCGCCCCGGGATTCCAGTGCCTTTTCCTACTCCAGCAGGAGATTTCACCATATTGGCAGGAGACTGGTACAAGAGAAATCACACAGATTTGAGGGCAATTTTGGATGGTGGAAGTGACCTTCCCTTCCCTGATGGGATTATCATCAATGGTCGTGGTTCCAATGCTTACACATTCACAGTTGATCAAGGCAAGACATACAGATTCAGGATATCAAATGTAGGGCTCACCACTTCCATCAACTTTAGAATCCAAGGGCATAAAATGACAATTGTTGAGGTGGAAGGGACCCACACTCTCCAAAACGTTTATGACTCACTTGATGTTCATCTGGGGCAGACTTACTCTGTGTTGGTTACTGCTGATCAACCACCCCAAGACTACCTCATTGTCGTCACGACACGATTCACCTCCCAAGTGTTGAATGCTACCTCCATTTTTCGTTACAGTAACTCTGGTGGAGGTGTTACTGGCCTTTTCCCTTGGGGGCCAACTATTCAAGTTGATTGGTCTTTAAACCAAGCTCGCTCTCTTAGGAGGAATCTGACAGCAAGTGGGCCAAGACCTAATCCACAAGGATCATACCATTATGGTTTGATAAACACAACTCGTACAATTAGACTTCAAAATTCTGGTCCAGTTATCAATGGCAAACAGAGATATGCTGTCAATAGTGTGTCCTTCATACCTGCTGATACACCACTTAAACTGGCTGATTACTACAAGATCCAAGGGGTGTTCTCCCTTGGAAGTATCCCTGACTACCCCACTGGTAGTGGTGGCTACCTTCAAACTTCTGTCATGGAAGCCGATTTCCGAGGCTTTATAGAGGTTGTGTTTGAGAACACTGAAGACACTGTGGAGTCATGGCACGTTGATGGCCACAGCTTCTTTGTAGTAGGGTAA

Predicted protein sequences of Glyma06g46350

Limit To All Plant Sequences

>Glyma06g46350.1   sequence type=predicted peptide   gene model=Glyma06g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCSVRVCCVLFLVLLVACVRGEDPYRFYTWNVTYGDIYPLGVKQQGILINWQFPGPQIEAVTNDNLIINVYNSLDEPFLLSWNGVLQRRNSWQDGVYGTNCPILPGHNFTYVLQVKDQIGSYFYYPSLAFHKAAGGYGGFKIASRPGIPVPFPTPAGDFTILAGDWYKRNHTDLRAILDGGSDLPFPDGIIINGRGSNAYTFTVDQGKTYRFRISNVGLTTSINFRIQGHKMTIVEVEGTHTLQNVYDSLDVHLGQTYSVLVTADQPPQDYLIVVTTRFTSQVLNATSIFRYSNSGGGVTGLFPWGPTIQVDWSLNQARSLRRNLTASGPRPNPQGSYHYGLINTTRTIRLQNSGPVINGKQRYAVNSVSFIPADTPLKLADYYKIQGVFSLGSIPDYPTGSGGYLQTSVMEADFRGFIEVVFENTEDTVESWHVDGHSFFVVGMDGGQWSSASRLNYNLRDTVSRSTVQVYPKSWTAIYMPLDNVGMWNVRSENWVHQYLGQQFYLRVYSPANSWRDEYPIPSNAIRCGKAVGHY*

>Glyma06g46350.2   sequence type=predicted peptide   gene model=Glyma06g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCSVRVCCVLFLVLLVACVRGEDPYRFYTWNVTYGDIYPLGVKQQGILINWQFPGPQIEAVTNDNLIINVYNSLDEPFLLSWNGVLQRRNSWQDGVYGTNCPILPGHNFTYVLQVKDQIGSYFYYPSLAFHKAAGGYGGFKIASRPGIPVPFPTPAGDFTILAGDWYKRNHTDLRAILDGGSDLPFPDGIIINGRGSNAYTFTVDQGKTYRFRISNVGLTTSINFRIQGHKMTIVEVEGTHTLQNVYDSLDVHLGQTYSVLVTADQPPQDYLIVVTTRFTSQVLNATSIFRYSNSGGGVTGLFPWGPTIQVDWSLNQARSLRRNLTASGPRPNPQGSYHYGLINTTRTIRLQNSGPVINGKQRYAVNSVSFIPADTPLKLADYYKIQGVFSLGSIPDYPTGSGGYLQTSVMEADFRGFIEVVFENTEDTVESWHVDGHSFFVVG*

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