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Report for Sequence Feature Glyma06g45941

Feature Type:gene_model
Chromosome:Gm06
Start:48667744
stop:48669312
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g45941
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46410AT Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr2:19049315-19050185 REVERSE LENGTH=94 SoyBaseE_val: 3.00E-15ISS
GO:0001708GO-bp Annotation by Michelle Graham. GO Biological Process: cell fate specification SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0009913GO-bp Annotation by Michelle Graham. GO Biological Process: epidermal cell differentiation SoyBaseN/AISS
GO:0010063GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of trichoblast fate specification SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR10641Panther MYB-RELATED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_C6T1X2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T1X2_SOYBN SoyBaseE_val: 6.00E-32ISS
UniRef100_Q0PJH5UniRef Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB73 n=1 Tax=Glycine max RepID=Q0PJH5_SOYBN SoyBaseE_val: 7.00E-32ISS

Expression Patterns of Glyma06g45941
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g45941 not represented in the dataset
Glyma06g45941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g45941
ParalogEvidenceComments
Glyma12g10790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g45941 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g303100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g45941
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g45941
>Glyma06g45941.1   sequence type=CDS   gene model=Glyma06g45941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCTGCTGTTTCTACTGAAATCAAGCCAAGTTTCAGATGTTGAATTTTCTGAAGCTGAGGAAATCCTTATTGCCATGGTGTATAATCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACTGCAGAAGAGATAGAGAAATATTGGACTTCAAGATTTTCGACTAGCCAATGA
Predicted protein sequences of Glyma06g45941
>Glyma06g45941.1   sequence type=predicted peptide   gene model=Glyma06g45941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLLFLLKSSQVSDVEFSEAEEILIAMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRFSTSQ*






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