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Report for Sequence Feature Glyma06g45810

Feature Type:gene_model
Chromosome:Gm06
Start:48541553
stop:48544374
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g45810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03700AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr1:921038-921844 FORWARD LENGTH=164 SoyBaseE_val: 4.00E-65ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF64Panther INTEGRAL MEMBRANE FAMILY PROTEIN JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_B9RW00UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein RCOM_1174750 n=1 Tax=Ricinus communis RepID=CSPL6_RICCO SoyBaseE_val: 2.00E-68ISS
UniRef100_I1KFA2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFA2_SOYBN SoyBaseE_val: 3.00E-112ISS

Expression Patterns of Glyma06g45810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g45810 not represented in the dataset
Glyma06g45810 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g45810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g292900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g45810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g45810
>Glyma06g45810.1   sequence type=CDS   gene model=Glyma06g45810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGACTAGGAAGGCATGCCATCTTCTGTTAAGGTTCTTGGTCTTCTTGGCAACGCTTGCAGCGGTGATTTTGATGGCTACTAGCCATGAGACAGCTACCATCTTCACAGTGACCTTTGAAGCAAAATACACCAATTCCCCTGCCTTCAAGTACTTTGTGACTGCATATTCTGTTATCACTGTCTATGGATTTTTGGTGCTCTTTCTTCCTGCAAAAAGCTTGCTATGGAAATTAGTGGTGGCCTTGGATTTGCTGTTCACCATGTTAGTCGTCTCAAGCTTCTCTGCATCTTTGGCTATAGCTCAGGTGGGAAAGAAAGGAAACAGTGATGCAGGTTGGCTACCAATATGTGGCTCAGTCCCCAAATATTGTGATCAAGTGACAAGAGCTTTAATAGCTGGTTTCATTGCAATGATTATATACATAATTCTTCTGTTGCATTCCATTAATACTGTCATAGACCCTCTCCTCTTGAGACAAAGTTGA
Predicted protein sequences of Glyma06g45810
>Glyma06g45810.1   sequence type=predicted peptide   gene model=Glyma06g45810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKTRKACHLLLRFLVFLATLAAVILMATSHETATIFTVTFEAKYTNSPAFKYFVTAYSVITVYGFLVLFLPAKSLLWKLVVALDLLFTMLVVSSFSASLAIAQVGKKGNSDAGWLPICGSVPKYCDQVTRALIAGFIAMIIYIILLLHSINTVIDPLLLRQS*






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