SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25830 | AT | Annotation by Michelle Graham. TAIR10: terpene synthase-like sequence-1,8-cineole | chr3:9447545-9450316 FORWARD LENGTH=600 | SoyBase | E_val: 6.00E-157 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0016099 | GO-bp | Annotation by Michelle Graham. GO Biological Process: monoterpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0010333 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity | SoyBase | N/A | ISS |
| GO:0016829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lyase activity | SoyBase | N/A | ISS |
| GO:0034768 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: (E)-beta-ocimene synthase activity | SoyBase | N/A | ISS |
| GO:0050551 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: myrcene synthase activity | SoyBase | N/A | ISS |
| PF01397 | PFAM | Terpene synthase, N-terminal domain | JGI | ISS | |
| PF03936 | PFAM | Terpene synthase family, metal binding domain | JGI | ISS | |
| UniRef100_B1P189 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-ocimene synthase n=1 Tax=Phaseolus lunatus RepID=B1P189_PHALU | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KFA0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KFA0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma06g45780 not represented in the dataset |
Glyma06g45780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g10990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g302200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g45780.3 sequence type=transcript gene model=Glyma06g45780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAAGTAGCTAGCACACAGTACTACTGTTAAACATTCTCAGTTGCAAGCATAAGCCAACCTAGGATCGATAAAAATGACCCTTGTCAATTCCACGTTGCTTAATTCCTCTTTCATTTCAAATTTTAGTTTTGGCAAACCTCAGAAACCAGAAGGGACTAATAACCTTCTCCTGCGTAGAATTATTTGCCCTATCCGATGCAACGCAACAACCACCACCACAAACGTTAATGCTTCTGAAAGAAAATCAGCCAATTACCAGCCAAACCTCTGGAATTACGATTTTCTGCAGTCTTTGAAGTGTGACCATGCGGATATAAGATATGAGGACAAGGCCAAGAAGCTGCTAGAGGAAGTGAGGAGAATGATAAAGGATGAAAATACAGATATATGGATCAAACTTGAACTCATTGACGATGTGAAACGCTTGGGAATTGGCTACAGTTTTGACATGGAGATAGGAGAAGCCCTTCATAGGTGCCTCTCTTCTGAAACATTTATTGATACAATCACTCATAATCACAGAAGCCTGCATGAAACTGCTTTAAGCTTCAGGGTCCTCCGAGAATATGGCTATGATGTCACAACGGATATATTTGAGAGGTTTAAGGACTATAATGGTAATTTCAAGGCAATCCTTAGCAGAGATGTGAAGGGAATGTTGAGTCTATACGAGGCATCATTTCTAAGTTATGAAGGAGAACAGATTTTGGATGAGGCTAAGGCCTTCACTAGCTTCCATCTAAAGGGTGCCCTCAAAGAAGGTAGAAGCAATACTATGATCTTAGAACAAGTGAATCATGCAATGGAGCTTCCACTTCATCACAGAATCCAAAGGCTTGAAGCAAGGTGGTATATTGAATCTTATGCTAAAAGAAAAGATGCAAATATGGTGCTGCTTGAAGCAGCAAAACTGGATTTCAATATTGTGCAGTCAACTCTGCAAACAGATCTCCAAGAAATGTCAAGGTGGTGGAAAGGGATGGGACTAGCCTCAAAGTTAAGCTTCAGCCGAGATAGGCTAATGGAATGCTTCTTTTGGACGGTTGGAATGGTCTTTGAGCCTCAATTGAGTGATCTTCGCAAAGGTTTAACAAAAGTGGCTTCCTTAATTACTACAATTGATGACGTTTATGATGTGTATGGAACCTTGGATGAATTAGAACTTTTTACAGCAGCAGTAGAAAGTTGGGATGTTAAAGCAGTTCAAGTTCTACCGGATTACATGAAGATATGCTTTCTAGCACTCTACAACACTGTCAATGAATTTGCTTATGATGCACTTAAAGAGCAAGGACAAAATATTCTTCCCTACCTCACCAAAGCACATAACAAAGGAGGCACTTCAGTCCTTGGAAAATTACCATGCCTTGCTGCGGAGATCATCCACTATTTTTCGACTTTGCAATGATTTGGGCACTTCAAAGGCCGAGTTAGAGAGAGGTGAGGCAGCAAGTTCGATTGTGTGTTACATGCGTGAAAGTGGTGCTAGTGAAGAGGGTGCTTACAAACACATCCGCAGATTACTTAATGAAACGTGGAAGAAGATGAACAAAGATAAAGTGTCACAGTCTCCTTTCCCAAAACCTTTCATAGAAATAGCTATCAACCTTGGAAGAATTTCTCAGTGCACATACCAATACGGAGATGGGCATGGAGCTCCAGATAGCACAGTCGAGAATCGCATACGATCCTTGATAATTGAACCCATTGCCATCTAGGAGACTAGGCATTTGAACTATAATTTTAGAGGGCTTGTTATTGTATTTGCAAATAAATAGGATACGATGTATTCATCTTTCATCATTAATAGAATTAGTAGTAGTCGTTATATGTGTTTCATTTCTTAATATGGTACTACCTC
>Glyma06g45780.2 sequence type=CDS gene model=Glyma06g45780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCTTGTCAATTCCACGTTGCTTAATTCCTCTTTCATTTCAAATTTTAGTTTTGGCAAACCTCAGAAACCAGAAGGGACTAATAACCTTCTCCTGCGTAGAATTATTTGCCCTATCCGATGCAACGCAACAACCACCACCACAAACGTTAATGCTTCTGAAAGAAAATCAGCCAATTACCAGCCAAACCTCTGGAATTACGATTTTCTGCAGTCTTTGAAGTGTGACCATGCGGATATAAGATATGAGGACAAGGCCAAGAAGCTGCTAGAGGAAGTGAGGAGAATGATAAAGGATGAAAATACAGATATATGGATCAAACTTGAACTCATTGACGATGTGAAACGCTTGGGAATTGGCTACAGTTTTGACATGGAGATAGGAGAAGCCCTTCATAGGTGCCTCTCTTCTGAAACATTTATTGATACAATCACTCATAATCACAGAAGCCTGCATGAAACTGCTTTAAGCTTCAGGGTCCTCCGAGAATATGGCTATGATGTCACAACGGATATATTTGAGAGGTTTAAGGACTATAATGGTAATTTCAAGGCAATCCTTAGCAGAGATGTGAAGGGAATGTTGAGTCTATACGAGGCATCATTTCTAAGTTATGAAGGAGAACAGATTTTGGATGAGGCTAAGGCCTTCACTAGCTTCCATCTAAAGGGTGCCCTCAAAGAAGGTAGAAGCAATACTATGATCTTAGAACAAGTGAATCATGCAATGGAGCTTCCACTTCATCACAGAATCCAAAGGCTTGAAGCAAGGTGGTATATTGAATCTTATGCTAAAAGAAAAGATGCAAATATGGTGCTGCTTGAAGCAGCAAAACTGGATTTCAATATTGTGCAGTCAACTCTGCAAACAGATCTCCAAGAAATGTCAAGGTGGTGGAAAGGGATGGGACTAGCCTCAAAGTTAAGCTTCAGCCGAGATAGGCTAATGGAATGCTTCTTTTGGACGGTTGGAATGGTCTTTGAGCCTCAATTGAGTGATCTTCGCAAAGGTTTAACAAAAGTGGCTTCCTTAATTACTACAATTGATGACGTTTATGATGTGTATGGAACCTTGGATGAATTAGAACTTTTTACAGCAGCAGTAGAAAGTTGGGATGTTAAAGCAGTTCAAGTTCTACCGGATTACATGAAGATATGCTTTCTAGCACTCTACAACACTGTCAATGAATTTGCTTATGATGCACTTAAAGAGCAAGGACAAAATATTCTTCCCTACCTCACCAAAGCATGGTCTAATATGTTGAAAGCATTCCTAGAAGAAGCTAAGTGGTCCCGGGACAAACACGTGCCAAAATTTGACGATTACCTCAATAATGCATGGGTTTCAGTCTCTGGGGTTGTTATACTGACCCATGCCTATTTCTTGCTAAATCATAGCATAACAAAGGAGGCACTTCAGTCCTTGGAAAATTACCATGCCTTGCTGCGGAGATCATCCACTATTTTTCGACTTTGCAATGATTTGGGCACTTCAAAGGCCGAGTTAGAGAGAGGTGAGGCAGCAAGTTCGATTGTGTGTTACATGCGTGAAAGTGGTGCTAGTGAAGAGGGTGCTTACAAACACATCCGCAGATTACTTAATGAAACGTGGAAGAAGATGAACAAAGATAAAGTGTCACAGTCTCCTTTCCCAAAACCTTTCATAGAAATAGCTATCAACCTTGGAAGAATTTCTCAGTGCACATACCAATACGGAGATGGGCATGGAGCTCCAGATAGCACAGTCGAGAATCGCATACGATCCTTGATAATTGAACCCATTGCCATCTAG >Glyma06g45780.3 sequence type=CDS gene model=Glyma06g45780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCTTGTCAATTCCACGTTGCTTAATTCCTCTTTCATTTCAAATTTTAGTTTTGGCAAACCTCAGAAACCAGAAGGGACTAATAACCTTCTCCTGCGTAGAATTATTTGCCCTATCCGATGCAACGCAACAACCACCACCACAAACGTTAATGCTTCTGAAAGAAAATCAGCCAATTACCAGCCAAACCTCTGGAATTACGATTTTCTGCAGTCTTTGAAGTGTGACCATGCGGATATAAGATATGAGGACAAGGCCAAGAAGCTGCTAGAGGAAGTGAGGAGAATGATAAAGGATGAAAATACAGATATATGGATCAAACTTGAACTCATTGACGATGTGAAACGCTTGGGAATTGGCTACAGTTTTGACATGGAGATAGGAGAAGCCCTTCATAGGTGCCTCTCTTCTGAAACATTTATTGATACAATCACTCATAATCACAGAAGCCTGCATGAAACTGCTTTAAGCTTCAGGGTCCTCCGAGAATATGGCTATGATGTCACAACGGATATATTTGAGAGGTTTAAGGACTATAATGGTAATTTCAAGGCAATCCTTAGCAGAGATGTGAAGGGAATGTTGAGTCTATACGAGGCATCATTTCTAAGTTATGAAGGAGAACAGATTTTGGATGAGGCTAAGGCCTTCACTAGCTTCCATCTAAAGGGTGCCCTCAAAGAAGGTAGAAGCAATACTATGATCTTAGAACAAGTGAATCATGCAATGGAGCTTCCACTTCATCACAGAATCCAAAGGCTTGAAGCAAGGTGGTATATTGAATCTTATGCTAAAAGAAAAGATGCAAATATGGTGCTGCTTGAAGCAGCAAAACTGGATTTCAATATTGTGCAGTCAACTCTGCAAACAGATCTCCAAGAAATGTCAAGGTGGTGGAAAGGGATGGGACTAGCCTCAAAGTTAAGCTTCAGCCGAGATAGGCTAATGGAATGCTTCTTTTGGACGGTTGGAATGGTCTTTGAGCCTCAATTGAGTGATCTTCGCAAAGGTTTAACAAAAGTGGCTTCCTTAATTACTACAATTGATGACGTTTATGATGTGTATGGAACCTTGGATGAATTAGAACTTTTTACAGCAGCAGTAGAAAGTTGGGATGTTAAAGCAGTTCAAGTTCTACCGGATTACATGAAGATATGCTTTCTAGCACTCTACAACACTGTCAATGAATTTGCTTATGATGCACTTAAAGAGCAAGGACAAAATATTCTTCCCTACCTCACCAAAGCACATAACAAAGGAGGCACTTCAGTCCTTGGAAAATTACCATGCCTTGCTGCGGAGATCATCCACTATTTTTCGACTTTGCAATGA
>Glyma06g45780.2 sequence type=predicted peptide gene model=Glyma06g45780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLVNSTLLNSSFISNFSFGKPQKPEGTNNLLLRRIICPIRCNATTTTTNVNASERKSANYQPNLWNYDFLQSLKCDHADIRYEDKAKKLLEEVRRMIKDENTDIWIKLELIDDVKRLGIGYSFDMEIGEALHRCLSSETFIDTITHNHRSLHETALSFRVLREYGYDVTTDIFERFKDYNGNFKAILSRDVKGMLSLYEASFLSYEGEQILDEAKAFTSFHLKGALKEGRSNTMILEQVNHAMELPLHHRIQRLEARWYIESYAKRKDANMVLLEAAKLDFNIVQSTLQTDLQEMSRWWKGMGLASKLSFSRDRLMECFFWTVGMVFEPQLSDLRKGLTKVASLITTIDDVYDVYGTLDELELFTAAVESWDVKAVQVLPDYMKICFLALYNTVNEFAYDALKEQGQNILPYLTKAWSNMLKAFLEEAKWSRDKHVPKFDDYLNNAWVSVSGVVILTHAYFLLNHSITKEALQSLENYHALLRRSSTIFRLCNDLGTSKAELERGEAASSIVCYMRESGASEEGAYKHIRRLLNETWKKMNKDKVSQSPFPKPFIEIAINLGRISQCTYQYGDGHGAPDSTVENRIRSLIIEPIAI* >Glyma06g45780.3 sequence type=predicted peptide gene model=Glyma06g45780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLVNSTLLNSSFISNFSFGKPQKPEGTNNLLLRRIICPIRCNATTTTTNVNASERKSANYQPNLWNYDFLQSLKCDHADIRYEDKAKKLLEEVRRMIKDENTDIWIKLELIDDVKRLGIGYSFDMEIGEALHRCLSSETFIDTITHNHRSLHETALSFRVLREYGYDVTTDIFERFKDYNGNFKAILSRDVKGMLSLYEASFLSYEGEQILDEAKAFTSFHLKGALKEGRSNTMILEQVNHAMELPLHHRIQRLEARWYIESYAKRKDANMVLLEAAKLDFNIVQSTLQTDLQEMSRWWKGMGLASKLSFSRDRLMECFFWTVGMVFEPQLSDLRKGLTKVASLITTIDDVYDVYGTLDELELFTAAVESWDVKAVQVLPDYMKICFLALYNTVNEFAYDALKEQGQNILPYLTKAHNKGGTSVLGKLPCLAAEIIHYFSTLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
