SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16030 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:6974196-6974891 REVERSE LENGTH=231 | SoyBase | E_val: 4.00E-46 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| PF08241 | PFAM | Methyltransferase domain | JGI | ISS | |
| UniRef100_E5GC82 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Methyltransferase n=1 Tax=Cucumis melo subsp. melo RepID=E5GC82_CUCME | SoyBase | E_val: 3.00E-33 | ISS |
| UniRef100_I1LRU8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LRU8_SOYBN | SoyBase | E_val: 1.00E-85 | ISS |
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Glyma06g45655 not represented in the dataset |
Glyma06g45655 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g11170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g301100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g45655.1 sequence type=CDS gene model=Glyma06g45655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTAAAGTAAAACACACTCATCCACACCCAAATCCACTGCGTCCCCCACCACGCGCCGAGGAAGCCGCACCTCCGCTTCCCCAAATCCACTGCGACTTCTCCTCCACGCGCCCCCACGTCCCCGCCAAGAACCGCGCCCTGCGCGTTCAGTCCACGCGCCTCTGGGCCGCCAAGGTCCTCTCCTTCTCCCTCCTCTTCCGCGACCACCTCCTCCTCCGCGCCGCCGCCTTCAACCACTCCTGCGTCCTCTGCGTCTCCGCTGGCGCCGGCCAGGAGGTCGCCGCGCTCCGCCTCCTCGGCATCGACGACGTCACCGGCGTCGAGATCCTCGAGTCCCCGCCGCTCGTCCGCCGCGCCGATCCGCACAACCTCCCGTTCTTCGACGGCGTGTTCGACCTCGCCTTCACCGCGCGGTTCGACGAGGCGCTGTTTGCCGCCGAGATGGAGCGCGTGATCCGGCCTGGCGGCGCGTGCGTTGTTCTCGTGGCGGAGTCTGGGGAGGATGAGGTGAGGGAGGTTGTTGGATTATTTAGGAATTCGAGGCTTGTTAGGTGGAGTAATGTTTCTGACTGGAATGAGAATGGCCAGTGTTCTTTTGAGAACTAG
>Glyma06g45655.1 sequence type=predicted peptide gene model=Glyma06g45655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCKVKHTHPHPNPLRPPPRAEEAAPPLPQIHCDFSSTRPHVPAKNRALRVQSTRLWAAKVLSFSLLFRDHLLLRAAAFNHSCVLCVSAGAGQEVAALRLLGIDDVTGVEILESPPLVRRADPHNLPFFDGVFDLAFTARFDEALFAAEMERVIRPGGACVVLVAESGEDEVREVVGLFRNSRLVRWSNVSDWNENGQCSFEN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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