SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21490 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)H dehydrogenase B3 | chr4:11436495-11439326 REVERSE LENGTH=580 | SoyBase | E_val: 0 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003954 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| PTHR22915 | Panther | NADH DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR22915:SF4 | Panther | NADH DEHYDROGENASE-RELATED | JGI | ISS | |
| PF00070 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| PF07992 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| UniRef100_E5GBQ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADH dehydrogenase n=1 Tax=Cucumis melo subsp. melo RepID=E5GBQ4_CUCME | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KF65 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KF65_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g45340 not represented in the dataset |
Glyma06g45340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g11681 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g298300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g45340.2 sequence type=transcript gene model=Glyma06g45340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTCCCTTAGATAGTACTATCTATGTTCTTTATTATAAGAAATAAGTTGTAGTGTATTTAAACTATAACTTGTTTCTTATAAATAGGAACAAAGATATAGTATTGCATAGTGTATTTGCTTCAAAATTATATTTTAGTCGAACCATAGTTATAGTACATACACTTACTTACAAGGAGAAACTGTGTCAACAGAGCGGTGTAAATATTCATTTCAGTGAAGCTGAATGCTATAAGATCGATAACAAGAACAACAAAGTTTATTGCCGTGCTAGTAAAGACAAAAAGTTGGGTGGCCAAGAAGACTTTTCCATTGATTATGATTACCTGGTAATAGCCATGGGAGGCCGTTCTAATACCTTCAACACACCTGGTGTTCAAGAGCATGCCCATTTCTTGAAGGAAGTGGATGAAGCTCTAAAAATTCGTCATACAGTGGTTGACCTTTTTGAAAGAGCTAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAACTTCTGAGTTTCGTAGTTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCTGAGCTTCATGACTTTGTGCTTGAGGATATGGCTAAGTTATATCCTTCCCTTAAAGACTATGTGAAGATTACTCTCCTGGAGGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAACAAAAGTTTGCCAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAACGAAATCACTGCCAAAGAAAGGTCAAGTGGACAAATTGTTTCTATACCTCACGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAGTAGTTGAATTTATGAAGCAGCTTGGCCAGGTTAATAGACGTGCACTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTCTAGGCGATTGTGCTACTATAAATCAACGTAGAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGAACAATTCTGGAAAATTAGATCTTCAAGAATTTAAAGAAGTTGTTGGCGACATTATTGACAGGTATCCACAAGTGGACATTTATTTAAAGAAGAACCAAATGAAAGACATGGCCAGCTTGCTAAAGAAATCTCAAGAAAGCAATATTATAGTGGACATTGAATACTTTAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCACAACAAGGAGTCTATCTTGCAAACTGTTTCAACCGCATGGAGGAGTGTGAGAAGTATCCAGAAGGCCCTCTCAGGTTCAGGGGAGTTGGACGCCATCGGTTCCGTCCCTTCAGGTACAAGCATTTGGGACAATTTGCTCCTCTAGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTATGGTATTCGGTGTATACAAGCAAACAAGTGAGCTGGAGGACAAGGTTTTTGGTGGTTGGTGACTGGGGAAGGCGATTCATATTTGGAAGGGACTCAAGTAAAATCTAAGATCTCATTGAAAGCTAAGGCCTACTTCATATAGATTTCTTGGCACAGCAGAGTAAATGATCCACAAAAAATAGAAAGAAAAAAATGTGTTTTTTTTATGCAACTTTCTTTTTCTCTTTCTCCCTATCTTATAGTATATTAATTGTAATTGATAAACAACCTTATGTTTTGAATTGGTTTTGGTTGCCAAACAAAAAAGATCACATTTACAGGGTCC
>Glyma06g45340.1 sequence type=CDS gene model=Glyma06g45340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAAGCAACTCCTATGATATTCATGTGGTTTTACCACGTAACTACTTTGCATTCACTCCATTGCTACCAAGTGTCACGTGTGGCACAGTGGAAGCAAGGAGCGTCGTTGAACCGATTCGCAGTATCACACGAAAGAGCGGTGTAAATATTCATTTCAGTGAAGCTGAATGCTATAAGATCGATAACAAGAACAACAAAGTTTATTGCCGTGCTAGTAAAGACAAAAAGTTGGGTGGCCAAGAAGACTTTTCCATTGATTATGATTACCTGGTAATAGCCATGGGAGGCCGTTCTAATACCTTCAACACACCTGGTGTTCAAGAGCATGCCCATTTCTTGAAGGAAGTGGATGAAGCTCTAAAAATTCGTCATACAGTGGTTGACCTTTTTGAAAGAGCTAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAACTTCTGAGTTTCGTAGTTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCTGAGCTTCATGACTTTGTGCTTGAGGATATGGCTAAGTTATATCCTTCCCTTAAAGACTATGTGAAGATTACTCTCCTGGAGGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAACAAAAGTTTGCCAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAACGAAATCACTGCCAAAGAAAGGTCAAGTGGACAAATTGTTTCTATACCTCACGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAGTAGTTGAATTTATGAAGCAGCTTGGCCAGGTTAATAGACGTGCACTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTCTAGGCGATTGTGCTACTATAAATCAACGTAGAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGAACAATTCTGGAAAATTAGATCTTCAAGAATTTAAAGAAGTTGTTGGCGACATTATTGACAGGTATCCACAAGTGGACATTTATTTAAAGAAGAACCAAATGAAAGACATGGCCAGCTTGCTAAAGAAATCTCAAGAAAGCAATATTATAGTGGACATTGAATACTTTAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCACAACAAGGAGTCTATCTTGCAAACTGTTTCAACCGCATGGAGGAGTGTGAGAAGTATCCAGAAGGCCCTCTCAGGTTCAGGGGAGTTGGACGCCATCGGTTCCGTCCCTTCAGGTACAAGCATTTGGGACAATTTGCTCCTCTAGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTATGGTATTCGGTGTATACAAGCAAACAAGTGAGCTGGAGGACAAGGTTTTTGGTGGTTGGTGACTGGGGAAGGCGATTCATATTTGGAAGGGACTCAAGTAAAATCTAA >Glyma06g45340.2 sequence type=CDS gene model=Glyma06g45340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGGCCGTTCTAATACCTTCAACACACCTGGTGTTCAAGAGCATGCCCATTTCTTGAAGGAAGTGGATGAAGCTCTAAAAATTCGTCATACAGTGGTTGACCTTTTTGAAAGAGCTAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAACTTCTGAGTTTCGTAGTTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCTGAGCTTCATGACTTTGTGCTTGAGGATATGGCTAAGTTATATCCTTCCCTTAAAGACTATGTGAAGATTACTCTCCTGGAGGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAACAAAAGTTTGCCAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAACGAAATCACTGCCAAAGAAAGGTCAAGTGGACAAATTGTTTCTATACCTCACGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAGTAGTTGAATTTATGAAGCAGCTTGGCCAGGTTAATAGACGTGCACTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTCTAGGCGATTGTGCTACTATAAATCAACGTAGAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGAACAATTCTGGAAAATTAGATCTTCAAGAATTTAAAGAAGTTGTTGGCGACATTATTGACAGGTATCCACAAGTGGACATTTATTTAAAGAAGAACCAAATGAAAGACATGGCCAGCTTGCTAAAGAAATCTCAAGAAAGCAATATTATAGTGGACATTGAATACTTTAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCACAACAAGGAGTCTATCTTGCAAACTGTTTCAACCGCATGGAGGAGTGTGAGAAGTATCCAGAAGGCCCTCTCAGGTTCAGGGGAGTTGGACGCCATCGGTTCCGTCCCTTCAGGTACAAGCATTTGGGACAATTTGCTCCTCTAGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTATGGTATTCGGTGTATACAAGCAAACAAGTGAGCTGGAGGACAAGGTTTTTGGTGGTTGGTGACTGGGGAAGGCGATTCATATTTGGAAGGGACTCAAGTAAAATCTAA
>Glyma06g45340.1 sequence type=predicted peptide gene model=Glyma06g45340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSNSYDIHVVLPRNYFAFTPLLPSVTCGTVEARSVVEPIRSITRKSGVNIHFSEAECYKIDNKNNKVYCRASKDKKLGGQEDFSIDYDYLVIAMGGRSNTFNTPGVQEHAHFLKEVDEALKIRHTVVDLFERASLPSLPVEEKKKLLSFVVVGGGPTGVEFAAELHDFVLEDMAKLYPSLKDYVKITLLEAGDHILNMFDKRITEFAEQKFARDGIDVRLGSMVVKVGENEITAKERSSGQIVSIPHGMVVWSTGIGARPEVVEFMKQLGQVNRRALVTDEWLRVEGSDNIYALGDCATINQRRVMEDIAVIFSKADKNNSGKLDLQEFKEVVGDIIDRYPQVDIYLKKNQMKDMASLLKKSQESNIIVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLANCFNRMEECEKYPEGPLRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVSWRTRFLVVGDWGRRFIFGRDSSKI* >Glyma06g45340.2 sequence type=predicted peptide gene model=Glyma06g45340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGRSNTFNTPGVQEHAHFLKEVDEALKIRHTVVDLFERASLPSLPVEEKKKLLSFVVVGGGPTGVEFAAELHDFVLEDMAKLYPSLKDYVKITLLEAGDHILNMFDKRITEFAEQKFARDGIDVRLGSMVVKVGENEITAKERSSGQIVSIPHGMVVWSTGIGARPEVVEFMKQLGQVNRRALVTDEWLRVEGSDNIYALGDCATINQRRVMEDIAVIFSKADKNNSGKLDLQEFKEVVGDIIDRYPQVDIYLKKNQMKDMASLLKKSQESNIIVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLANCFNRMEECEKYPEGPLRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVSWRTRFLVVGDWGRRFIFGRDSSKI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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