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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G03400 | AT | Annotation by Michelle Graham. TAIR10: Auxin-responsive GH3 family protein | chr4:1497675-1499729 REVERSE LENGTH=591 | SoyBase | E_val: 0 | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PF03321 | PFAM | GH3 auxin-responsive promoter | JGI | ISS | |
| UniRef100_B9RW45 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Indole-3-acetic acid-amido synthetase GH3.5, putative n=1 Tax=Ricinus communis RepID=B9RW45_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339B7E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339B7E related cluster n=1 Tax=unknown RepID=UPI0002339B7E | SoyBase | E_val: 0 | ISS |
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Glyma06g45120 not represented in the dataset |
Glyma06g45120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g11890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g296500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g45120.3 sequence type=transcript gene model=Glyma06g45120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATGATCCTTACATTAAGGAAGAATATTTCTCTTTCTTTCTCTCCCCGTAATAAAATGATAATACCATTTCCTGTGGTCTATATCTATTGTGTTGTACCATATCGTGAAACTTAATTCTGCAAATATCAGAGGTTTGTTGAACCTTTTGAATAGGGGACATATAAGCTCTAGATAGCAACATAAAGTAGTGGGTTCCCTTTGGTTTTTTCTCGTTATATTTCCCTCACTGAGACACACACACACCTCCACCAACAACACTATATCATTACTTTTAGCACCTCACTTAGTTCCTCATGCCGCAGCACCAACCAACTCTAATGGAACCTATTCTCAGCTACAACAATGGCAATGGCAACAACAGTGACTATGATGTCATGAACTGGTTTGAGGATTTATCTCAAAACGCTGGTTTTGTTCAGACTCAGTTGCTGTGCCAGATTCTGGAGCAGAACTATGGGGTGGAATATCTCAAGAAATGGTTGGGGAGCTACAACATCCTTGAGATGGATGCATGTGCATTGGAATCACTTTTCTCTTCTGTGGTTCCCCTTGCTTCACATGCTGATTTTGAACCATTTATGCAACGGATTGCAGATGGGGACACAACTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTAAGTTCTGGAACCACAGAGGGGAGGCAGAAGTTCGTACCATTTACCCGCCATAGTGCACAAACCACGCTTCAAATATTCACCTTAGCTGCAGCATATAGATCAAGGGTTTATCCAATAAGGGAAGGTGGAAGGGTTCTTGAATTCATATACAGCAGCAACAGGTTCAAAACAAAAGGAGGTTTAACAGTAGGAACCGCTACAACACACTACTATGCTAGTGAAGAATTCAAAATCAAGCAGCACAAGACCAAGTCATTCACTTGTAGCCCTCAAGAAGTGATTTCTGGTGGAGACTACAAGCAATCCACATATTGTCACCTTCTTCTTGGCCTATACTTCTCTGACCAAGTTGAGTTTATAACCTCAGCTTTTATCTACAGCATGGTGCAAGCTTTCACCACTTTTGAGGAACTTTGGAGAGAAATTTGCAATGACATAAGAGATGGAACTCTTAGCTCAAGAATCAAGTCATCCAAAATGAGAAAGGCTGCTTTGGATATCATCTCTCCAAGCCCAAATTTGGCCTCAAAGTTAGAAGATTCTTGCAAGGAGCTAGAAGGGGTGGATTGGTTTGGTTTGATTCCAAAACTTTGGCCAAATGCAAAGTATGTTTATTCCATAATGACAGGGTCCATGCAACCATATTTGAAAAAACTTAGGCACTATGCAAATGGGTTGCCTTTGGTTAGTGCTGAATATGGCTCAACTGAGAGCTGGATAGGGGTTAATGTTGACCCTAGTTTGCCACCAGAAGATGTAACATTTGCTGTGGTTCCCACTTTCTCTTACTTTGAGTTCATTCCACTTCACAGGCATGAAAAAAAATTGAGTTCAGGAGGTGATGATTTCATGGAAGATAAGCCAATTCCACTGTCTCAGATCAAAGTTGGACAAGAATATGAAGTAGTCCTCACAACTTCACGGGACTGTACAGGTGCAGGTTAGGGGATGTGGTGGAAGTAGCCAGCTTCCACAATGGGATCCCAAAGTTGAACTTTGTGTGCAGAAGAAAGTTAATTCTGACAGTAAATATAGACAAGAACACAGAAAAGGACCTTCAGCTAGTGGTAGAGAGAGGGTCTCATATTCTGAACAAGGCAAGTAGAGCTGAGCTAATTGATTTCACAAGCTATGCAGATGTCTCAAACCAACCGGGTCACTACGTAATTTACTGGGAGATCAAAGGAGAAGTTGAGGACAATGTTCTTGGTGCATGCTGCAACGAAATGGACAAGTCTTTTGCGGATCATGGCTATGTTGTGTCAAGGAAAACCAACTCGATAGGACCCTTGGAGCTTTGCGTTTTGGAGAGTGGGACTTTCAAGAAGATCTTGGACAACTTCATTGCTAATGGGGCAGCACTTAGCCAATTCAAGACACCCAGGTGCACCAATAATCATGTCATCCTCAAAATTCTTAACACGTGCACCACCAAAAAGTTTCGGAGCACTGCTTACAACAACTGTTCAAATGAACAATGATTGATATGATTATATGAATGAATGAACAATTATTAATCTTAATTTTCGGGACTCTTTCAAAATTTTGTGCTGCTTAATTTTCTTTTACATCATGTAGGAATGAAAATAAATGTTGAATATTATATTAGTG
>Glyma06g45120.2 sequence type=CDS gene model=Glyma06g45120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGCAGCACCAACCAACTCTAATGGAACCTATTCTCAGCTACAACAATGGCAATGGCAACAACAGTGACTATGATGTCATGAACTGGTTTGAGGATTTATCTCAAAACGCTGGTTTTGTTCAGACTCAGTTGCTGTGCCAGATTCTGGAGCAGAACTATGGGGTGGAATATCTCAAGAAATGGTTGGGGAGCTACAACATCCTTGAGATGGATGCATGTGCATTGGAATCACTTTTCTCTTCTGTGGTTCCCCTTGCTTCACATGCTGATTTTGAACCATTTATGCAACGGATTGCAGATGGGGACACAACTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTAAGTTCTGGAACCACAGAGGGGAGGCAGAAGTTCGTACCATTTACCCGCCATAGTGCACAAACCACGCTTCAAATATTCACCTTAGCTGCAGCATATAGATCAAGGGTTTATCCAATAAGGGAAGGTGGAAGGGTTCTTGAATTCATATACAGCAGCAACAGGTTCAAAACAAAAGGAGGTTTAACAGTAGGAACCGCTACAACACACTACTATGCTAGTGAAGAATTCAAAATCAAGCAGCACAAGACCAAGTCATTCACTTGTAGCCCTCAAGAAGTGATTTCTGGTGGAGACTACAAGCAATCCACATATTGTCACCTTCTTCTTGGCCTATACTTCTCTGACCAAGTTGAGTTTATAACCTCAGCTTTTATCTACAGCATGGTGCAAGCTTTCACCACTTTTGAGGAACTTTGGAGAGAAATTTGCAATGACATAAGAGATGGAACTCTTAGCTCAAGAATCAAGTCATCCAAAATGAGAAAGGCTGCTTTGGATATCATCTCTCCAAGCCCAAATTTGGCCTCAAAGTTAGAAGATTCTTGCAAGGAGCTAGAAGGGGTGGATTGGTTTGGTTTGATTCCAAAACTTTGGCCAAATGCAAAGTATGTTTATTCCATAATGACAGGGTCCATGCAACCATATTTGAAAAAACTTAGGCACTATGCAAATGGGTTGCCTTTGGTTAGTGCTGAATATGGCTCAACTGAGAGCTGGATAGGGGTTAATGTTGACCCTAGTTTGCCACCAGAAGATGTAACATTTGCTGTGGTTCCCACTTTCTCTTACTTTGAGTTCATTCCACTTCACAGGCATGAAAAAAAATTGAGTTCAGGAGGACTGTACAGGTGCAGGTTAGGGGATGTGGTGGAAGTAGCCAGCTTCCACAATGGGATCCCAAAGTTGAACTTTGTGTGCAGAAGAAAGTTAATTCTGACAGTAAATATAGACAAGAACACAGAAAAGGACCTTCAGCTAGTGGTAGAGAGAGGGTCTCATATTCTGAACAAGGCAAGTAGAGCTGAGCTAATTGATTTCACAAGCTATGCAGATGTCTCAAACCAACCGGGTCACTACGTAATTTACTGGGAGATCAAAGGAGAAGTTGAGGACAATGTTCTTGGTGCATGCTGCAACGAAATGGACAAGTCTTTTGCGGATCATGGCTATGTTGTGTCAAGGAAAACCAACTCGATAGGACCCTTGGAGCTTTGCGTTTTGGAGAGTGGGACTTTCAAGAAGATCTTGGACAACTTCATTGCTAATGGGGCAGCACTTAGCCAATTCAAGACACCCAGGTGCACCAATAATCATGTCATCCTCAAAATTCTTAACACGTGCACCACCAAAAAGTTTCGGAGCACTGCTTACAACAACTGTTCAAATGAACAATGA >Glyma06g45120.3 sequence type=CDS gene model=Glyma06g45120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGCAGCACCAACCAACTCTAATGGAACCTATTCTCAGCTACAACAATGGCAATGGCAACAACAGTGACTATGATGTCATGAACTGGTTTGAGGATTTATCTCAAAACGCTGGTTTTGTTCAGACTCAGTTGCTGTGCCAGATTCTGGAGCAGAACTATGGGGTGGAATATCTCAAGAAATGGTTGGGGAGCTACAACATCCTTGAGATGGATGCATGTGCATTGGAATCACTTTTCTCTTCTGTGGTTCCCCTTGCTTCACATGCTGATTTTGAACCATTTATGCAACGGATTGCAGATGGGGACACAACTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTAAGTTCTGGAACCACAGAGGGGAGGCAGAAGTTCGTACCATTTACCCGCCATAGTGCACAAACCACGCTTCAAATATTCACCTTAGCTGCAGCATATAGATCAAGGGTTTATCCAATAAGGGAAGGTGGAAGGGTTCTTGAATTCATATACAGCAGCAACAGGTTCAAAACAAAAGGAGGTTTAACAGTAGGAACCGCTACAACACACTACTATGCTAGTGAAGAATTCAAAATCAAGCAGCACAAGACCAAGTCATTCACTTGTAGCCCTCAAGAAGTGATTTCTGGTGGAGACTACAAGCAATCCACATATTGTCACCTTCTTCTTGGCCTATACTTCTCTGACCAAGTTGAGTTTATAACCTCAGCTTTTATCTACAGCATGGTGCAAGCTTTCACCACTTTTGAGGAACTTTGGAGAGAAATTTGCAATGACATAAGAGATGGAACTCTTAGCTCAAGAATCAAGTCATCCAAAATGAGAAAGGCTGCTTTGGATATCATCTCTCCAAGCCCAAATTTGGCCTCAAAGTTAGAAGATTCTTGCAAGGAGCTAGAAGGGGTGGATTGGTTTGGTTTGATTCCAAAACTTTGGCCAAATGCAAAGTATGTTTATTCCATAATGACAGGGTCCATGCAACCATATTTGAAAAAACTTAGGCACTATGCAAATGGGTTGCCTTTGGTTAGTGCTGAATATGGCTCAACTGAGAGCTGGATAGGGGTTAATGTTGACCCTAGTTTGCCACCAGAAGATGTAACATTTGCTGTGGTTCCCACTTTCTCTTACTTTGAGTTCATTCCACTTCACAGGCATGAAAAAAAATTGAGTTCAGGAGGTGATGATTTCATGGAAGATAAGCCAATTCCACTGTCTCAGATCAAAGTTGGACAAGAATATGAAGTAGTCCTCACAACTTCACGGGACTGTACAGGTGCAGGTTAG
>Glyma06g45120.2 sequence type=predicted peptide gene model=Glyma06g45120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPQHQPTLMEPILSYNNGNGNNSDYDVMNWFEDLSQNAGFVQTQLLCQILEQNYGVEYLKKWLGSYNILEMDACALESLFSSVVPLASHADFEPFMQRIADGDTTPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPIREGGRVLEFIYSSNRFKTKGGLTVGTATTHYYASEEFKIKQHKTKSFTCSPQEVISGGDYKQSTYCHLLLGLYFSDQVEFITSAFIYSMVQAFTTFEELWREICNDIRDGTLSSRIKSSKMRKAALDIISPSPNLASKLEDSCKELEGVDWFGLIPKLWPNAKYVYSIMTGSMQPYLKKLRHYANGLPLVSAEYGSTESWIGVNVDPSLPPEDVTFAVVPTFSYFEFIPLHRHEKKLSSGGLYRCRLGDVVEVASFHNGIPKLNFVCRRKLILTVNIDKNTEKDLQLVVERGSHILNKASRAELIDFTSYADVSNQPGHYVIYWEIKGEVEDNVLGACCNEMDKSFADHGYVVSRKTNSIGPLELCVLESGTFKKILDNFIANGAALSQFKTPRCTNNHVILKILNTCTTKKFRSTAYNNCSNEQ* >Glyma06g45120.3 sequence type=predicted peptide gene model=Glyma06g45120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPQHQPTLMEPILSYNNGNGNNSDYDVMNWFEDLSQNAGFVQTQLLCQILEQNYGVEYLKKWLGSYNILEMDACALESLFSSVVPLASHADFEPFMQRIADGDTTPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPIREGGRVLEFIYSSNRFKTKGGLTVGTATTHYYASEEFKIKQHKTKSFTCSPQEVISGGDYKQSTYCHLLLGLYFSDQVEFITSAFIYSMVQAFTTFEELWREICNDIRDGTLSSRIKSSKMRKAALDIISPSPNLASKLEDSCKELEGVDWFGLIPKLWPNAKYVYSIMTGSMQPYLKKLRHYANGLPLVSAEYGSTESWIGVNVDPSLPPEDVTFAVVPTFSYFEFIPLHRHEKKLSSGGDDFMEDKPIPLSQIKVGQEYEVVLTTSRDCTGAG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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