Glyma06g45080 - SoyBase

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Report for Sequence Feature Glyma06g45080

Feature Type:	gene_model
Chromosome:	Gm06
Start:	47854740
stop:	47859775
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g45080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03620	AT	Annotation by Michelle Graham. TAIR10: ELMO/CED-12 family protein \| chr1:904319-906013 REVERSE LENGTH=265	SoyBase	E_val: 2.00E-131	ISS
GO:0006909	GO-bp	Annotation by Michelle Graham. GO Biological Process: phagocytosis	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005856	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2998	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12771	Panther	ENGULFMENT AND CELL MOTILITY	JGI		ISS
PTHR12771:SF3	Panther	ELMO1	JGI		ISS
PF04727	PFAM	ELMO/CED-12 family	JGI		ISS
UniRef100_B6U671	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ELMO domain-containing protein 2 n=2 Tax=Zea mays RepID=B6U671_MAIZE	SoyBase	E_val: 8.00E-116	ISS
UniRef100_I1KF42	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KF42_SOYBN	SoyBase	E_val: 1.00E-170	ISS

Expression Patterns of Glyma06g45080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g45080 not represented in the dataset	Glyma06g45080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g45080

Paralog	Evidence	Comments
Glyma12g12210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g45080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g296000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g45080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g45080

Limit To All Plant Sequences

>Glyma06g45080.3   sequence type=transcript   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCATGTCCCCTCTTCTTCTTTCTGGCCCCACCACTTCCCTCTACTGTTCTAGTGGCTCTCTTTCTGACATTAACACCACCAAGTACCTACAACAACATCACAACCACTGACACCTCTTCTCAGATACCCTAACATCACATAGCAGGTAGACGAGGATGAGATTTATTGGAGACACAGAAAGGAAGATGAAGAGTTGGAATGGACACCTAATTCCACTCACTTGATATCTCAGTTGACTCAATGTTTTACTAATGCTATGGTTGGATCACGATCATGGATAGGAGGACTCTTTAACCGCACAACCACTAAGCGAAATGACAAATTCGTTGATTATCCTTTGATTCCTATTGAGGAGGAAAGGCTTCAAAGGCTTCAAGAACGGCTGCAAGTGCCTTATGATGAGACTCGACCTGATCATCAAGAATCACTGAGAGCTTTGTGGCATTGTTCCTTTCCTAATGTATCTCTGGAAGGCCTAATATCTGACCAATGGAAAGATATGGGATGGCAAGGACCTAATCCATCGACTGACTTTAGGGGATGTGGCTTCATTTCCCTTGAAAATCTACTGTTTTTCGCAAGGAAATATCCGGCATCTTTTCACAAGCTGTTGTTGAAGAAAGATGGAAACAGAGCAACCTGGGAATATCCATTTGCTGTTGCTGGCATTAATATATCATTTATGTTGATACAGATGTTGGATTTATGCTCAGAAAAGCCACGTTGTATTCCAGGCATGAATTTTGTCAAGTTATTAGGAGAAAATGAAGAAGCATTTGATGTTCTATACTGTATAGCTTTTGAGATGATGGATGCACAATGGCTGGCTCTGCATGCTTCTTACATGGATTTTAACGATGTTCTACAAGCAACACGAATGCAATTGGAGAGAGAGCTATCCTTAGAAGACATCAACAAAATACAAGACCTGCCTGCTTACAATTTGTTGTAACTTGTAAACAATAGCTTAATTATTCCTCTTCTGCTCATAAGCAACAAATTCCAAGTGGCAAATTTTTGTTAGTATTGAATCGTCACCATGCTTATCCTCAATGAACTGCAAGGCTTTATTCCTCTTCTGAATTAATTTTATGAGTCACCTTTGAAGTTCTTTATAGCTGACATTTGGTAAATGAGCTAATGACATTGAAGGGGCGTTTTGAGAA

>Glyma06g45080.4   sequence type=transcript   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACCAATTCTTGAAACCAATAAGTCAAGAATCTATATGTATCTAGATATCAAAATATCAAATATTACATTGCATTGTGTTATTATGTTACATTACAATATTACCTACATAGGACAAATATCATGTTTATCTTGTATGAAAAGTTGGTTGGCTAGAAAAAGAAAAATTCAATGCGAGGCAGAGCAGAGACACCAACCCTACTTTTCAAATCTTCTTTTGCATCACTAACTTCTTTACAGCATAAAGTGAAGCAATAAAAGAGATCCCTTTGTTATGCTTGTCCTTCTATTTCAATTTCAACGTGTTATCATGGCTTTTGTAACCTCAGGTTTGGCCTTCAATTAAGTTAGCACTTTGTTTGTTTTTTTTTAATTTTTTTTCTCTCTCTAGTAATTGCTACAGATGAAATCAGCGGATAAACAGAATAAGAATGATGAGGGAGGTTGAATTATATGAGGGGGTGCATGAATTGAGTGCAATCATAGATCACCCATTTGTTTCAAAATGGTTTTGTCTTTTTCTTCCTTTTGCTTTCGGTTAAAAGAAAAAAGGTTGAATGACCCTTGTTCCTGATTGCACCCTCATGAGATTGAGGAAGCGTAAACGATGTTTTCCTTCTTGTTCCTCTCTTCGCAAAGTAAATTCACCATTGTTTTCTCATATCTCTCTATCTTATGTTCCATGTCTGAAAAGTTTTCTTAAGAAAAATGTTGATAATGTAGAGGTTTATAAAGAATTGAAGAATTGTCATATCTTTCAGAAACTGTCTCTTTTTTTACCAAACTGTAATGCATTTAAAAAAATTGTCCTATGTGGATTGAATTGAGACTTGCATTTCGTTTTTCCAGTAGTTCTTGATCCGACAGTGATCTAGTAGTCTCAAGTGTTTTTCAGGTAGACGAGGATGAGATTTATTGGAGACACAGAAAGGAAGATGAAGAGTTGGAATGGACACCTAATTCCACTCACTTGATATCTCAGTTGACTCAATGTTTTACTAATGCTATGGTTGGATCACGATCATGGATAGGAGGACTCTTTAACCGCACAACCACTAAGCGAAATGACAAATTCGTTGATTATCCTTTGATTCCTATTGAGGAGGAAAGGCTTCAAAGGCTTCAAGAACGGCTGCAAGTGCCTTATGATGAGACTCGACCTGATCATCAAGAATCACTGAGAGCTTTGTGGCATTGTTCCTTTCCTAATGTATCTCTGGAAGGCCTAATATCTGACCAATGGAAAGATATGGGATGGCAAGGACCTAATCCATCGACTGACTTTAGGGGATGTGGCTTCATTTCCCTTGAAAATCTACTGTTTTTCGCAAGGAAATATCCGGCATCTTTTCACAAGCTGTTGTTGAAGAAAGATGGAAACAGAGCAACCTGGGAATATCCATTTGCTGTTGCTGGCATTAATATATCATTTATGTTGATACAGATGTTGGATTTATGCTCAGAAAAGCCACGTTGTATTCCAGGCATGAATTTTGTCAAGTTATTAGGAGAAAATGAAGAAGCATTTGATGTTCTATACTGTATAGCTTTTGAGATGATGGATGCACAATGGCTGGCTCTGCATGCTTCTTACATGGATTTTAACGATGTTCTACAAGCAACACGAATGCAATTGGAGAGAGAGCTATCCTTAGAAGACATCAACAAAATACAAGACCTGCCTGCTTACAATTTGTTGTAACTTGTAAACAATAGCTTAATTATTCCTCTTCTGCTCATAAGCAACAAATTCCAAGTGGCAAATTTTTGTTAGTATTGAATCGTCACCATGCTTATCCTCAATGAACTGCAAGGCTTTATTCCTCTTCTGAATTAATTTTATGAGTCACCTTTGAAGTTCTTTATAGCTGACATTTGGTAAATGAGCTAATGACATTGAAGGGGCGTTTTGAGAA

>Glyma06g45080.5   sequence type=transcript   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACCAATTCTTGAAACCAATAAGTCAAGAATCTATATGTATCTAGATATCAAAATATCAAATATTACATTGCATTGTGTTATTATGTTACATTACAATATTACCTACATAGGACAAATATCATGTTTATCTTGTATGAAAAGTTGGTTGGCTAGAAAAAGAAAAATTCAATGCGAGGCAGAGCAGAGACACCAACCCTACTTTTCAAATCTTCTTTTGCATCACTAACTTCTTTACAGCATAAAGTGAAGCAATAAAAGAGATCCCTTTGTTATGCTTGTCCTTCTATTTCAATTTCAACGTGTTATCATGGCTTTTGTAACCTCAGGTAGACGAGGATGAGATTTATTGGAGACACAGAAAGGAAGATGAAGAGTTGGAATGGACACCTAATTCCACTCACTTGATATCTCAGTTGACTCAATGTTTTACTAATGCTATGGTTGGATCACGATCATGGATAGGAGGACTCTTTAACCGCACAACCACTAAGCGAAATGACAAATTCGTTGATTATCCTTTGATTCCTATTGAGGAGGAAAGGCTTCAAAGGCTTCAAGAACGGCTGCAAGTGCCTTATGATGAGACTCGACCTGATCATCAAGAATCACTGAGAGCTTTGTGGCATTGTTCCTTTCCTAATGTATCTCTGGAAGGCCTAATATCTGACCAATGGAAAGATATGGGATGGCAAGGACCTAATCCATCGACTGACTTTAGGGGATGTGGCTTCATTTCCCTTGAAAATCTACTGTTTTTCGCAAGGAAATATCCGGCATCTTTTCACAAGCTGTTGTTGAAGAAAGATGGAAACAGAGCAACCTGGGAATATCCATTTGCTGTTGCTGGCATTAATATATCATTTATGTTGATACAGATGTTGGATTTATGCTCAGAAAAGCCACGTTGTATTCCAGGCATGAATTTTGTCAAGTTATTAGGAGAAAATGAAGAAGCATTTGATGTTCTATACTGTATAGCTTTTGAGATGATGGATGCACAATGGCTGGCTCTGCATGCTTCTTACATGGATTTTAACGATGTTCTACAAGCAACACGAATGCAATTGGAGAGAGAGCTATCCTTAGAAGACATCAACAAAATACAAGACCTGCCTGCTTACAATTTGTTGTAACTTGTAAACAATAGCTTAATTATTCCTCTTCTGCTCATAAGCAACAAATTCCAAGTGGCAAATTTTTGTTAGTATTGAATCGTCACCATGCTTATCCTCAATGAACTGCAAGGCTTTATTCCTCTTCTGAATTAATTTTATGAGTCACCTTTGAAGTTCTTTATAGCTGACATTTGGTAAATGAGCTAATGACATTGAAGGGGCGTTTTGAGAA

Coding sequences of Glyma06g45080

Limit To All Plant Sequences

>Glyma06g45080.2   sequence type=CDS   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCTTGTTCCTGATTGCACCCTCATGAGATTGAGGAAGCGTAAACGATGTTTTCCTTCTTGTTCCTCTCTTCGCAAAGTAGACGAGGATGAGATTTATTGGAGACACAGAAAGGAAGATGAAGAGTTGGAATGGACACCTAATTCCACTCACTTGATATCTCAGTTGACTCAATGTTTTACTAATGCTATGGTTGGATCACGATCATGGATAGGAGGACTCTTTAACCGCACAACCACTAAGCGAAATGACAAATTCGTTGATTATCCTTTGATTCCTATTGAGGAGGAAAGGCTTCAAAGGCTTCAAGAACGGCTGCAAGTGCCTTATGATGAGACTCGACCTGATCATCAAGAATCACTGAGAGCTTTGTGGCATTGTTCCTTTCCTAATGTATCTCTGGAAGGCCTAATATCTGACCAATGGAAAGATATGGGATGGCAAGGACCTAATCCATCGACTGACTTTAGGGGATGTGGCTTCATTTCCCTTGAAAATCTACTGTTTTTCGCAAGGAAATATCCGGCATCTTTTCACAAGCTGTTGTTGAAGAAAGATGGAAACAGAGCAACCTGGGAATATCCATTTGCTGTTGCTGGCATTAATATATCATTTATGTTGATACAGATGTTGGATTTATGCTCAGAAAAGCCACGTTGTATTCCAGGCATGAATTTTGTCAAGTTATTAGGAGAAAATGAAGAAGCATTTGATGTTCTATACTGTATAGCTTTTGAGATGATGGATGCACAATGGCTGGCTCTGCATGCTTCTTACATGGATTTTAACGATGTTCTACAAGCAACACGAATGCAATTGGAGAGAGAGCTATCCTTAGAAGACATCAACAAAATACAAGACCTGCCTGCTTACAATTTGTTGTAA

>Glyma06g45080.3   sequence type=CDS   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGATCACGATCATGGATAGGAGGACTCTTTAACCGCACAACCACTAAGCGAAATGACAAATTCGTTGATTATCCTTTGATTCCTATTGAGGAGGAAAGGCTTCAAAGGCTTCAAGAACGGCTGCAAGTGCCTTATGATGAGACTCGACCTGATCATCAAGAATCACTGAGAGCTTTGTGGCATTGTTCCTTTCCTAATGTATCTCTGGAAGGCCTAATATCTGACCAATGGAAAGATATGGGATGGCAAGGACCTAATCCATCGACTGACTTTAGGGGATGTGGCTTCATTTCCCTTGAAAATCTACTGTTTTTCGCAAGGAAATATCCGGCATCTTTTCACAAGCTGTTGTTGAAGAAAGATGGAAACAGAGCAACCTGGGAATATCCATTTGCTGTTGCTGGCATTAATATATCATTTATGTTGATACAGATGTTGGATTTATGCTCAGAAAAGCCACGTTGTATTCCAGGCATGAATTTTGTCAAGTTATTAGGAGAAAATGAAGAAGCATTTGATGTTCTATACTGTATAGCTTTTGAGATGATGGATGCACAATGGCTGGCTCTGCATGCTTCTTACATGGATTTTAACGATGTTCTACAAGCAACACGAATGCAATTGGAGAGAGAGCTATCCTTAGAAGACATCAACAAAATACAAGACCTGCCTGCTTACAATTTGTTGTAA

>Glyma06g45080.4   sequence type=CDS   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGATCACGATCATGGATAGGAGGACTCTTTAACCGCACAACCACTAAGCGAAATGACAAATTCGTTGATTATCCTTTGATTCCTATTGAGGAGGAAAGGCTTCAAAGGCTTCAAGAACGGCTGCAAGTGCCTTATGATGAGACTCGACCTGATCATCAAGAATCACTGAGAGCTTTGTGGCATTGTTCCTTTCCTAATGTATCTCTGGAAGGCCTAATATCTGACCAATGGAAAGATATGGGATGGCAAGGACCTAATCCATCGACTGACTTTAGGGGATGTGGCTTCATTTCCCTTGAAAATCTACTGTTTTTCGCAAGGAAATATCCGGCATCTTTTCACAAGCTGTTGTTGAAGAAAGATGGAAACAGAGCAACCTGGGAATATCCATTTGCTGTTGCTGGCATTAATATATCATTTATGTTGATACAGATGTTGGATTTATGCTCAGAAAAGCCACGTTGTATTCCAGGCATGAATTTTGTCAAGTTATTAGGAGAAAATGAAGAAGCATTTGATGTTCTATACTGTATAGCTTTTGAGATGATGGATGCACAATGGCTGGCTCTGCATGCTTCTTACATGGATTTTAACGATGTTCTACAAGCAACACGAATGCAATTGGAGAGAGAGCTATCCTTAGAAGACATCAACAAAATACAAGACCTGCCTGCTTACAATTTGTTGTAA

>Glyma06g45080.5   sequence type=CDS   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGATCACGATCATGGATAGGAGGACTCTTTAACCGCACAACCACTAAGCGAAATGACAAATTCGTTGATTATCCTTTGATTCCTATTGAGGAGGAAAGGCTTCAAAGGCTTCAAGAACGGCTGCAAGTGCCTTATGATGAGACTCGACCTGATCATCAAGAATCACTGAGAGCTTTGTGGCATTGTTCCTTTCCTAATGTATCTCTGGAAGGCCTAATATCTGACCAATGGAAAGATATGGGATGGCAAGGACCTAATCCATCGACTGACTTTAGGGGATGTGGCTTCATTTCCCTTGAAAATCTACTGTTTTTCGCAAGGAAATATCCGGCATCTTTTCACAAGCTGTTGTTGAAGAAAGATGGAAACAGAGCAACCTGGGAATATCCATTTGCTGTTGCTGGCATTAATATATCATTTATGTTGATACAGATGTTGGATTTATGCTCAGAAAAGCCACGTTGTATTCCAGGCATGAATTTTGTCAAGTTATTAGGAGAAAATGAAGAAGCATTTGATGTTCTATACTGTATAGCTTTTGAGATGATGGATGCACAATGGCTGGCTCTGCATGCTTCTTACATGGATTTTAACGATGTTCTACAAGCAACACGAATGCAATTGGAGAGAGAGCTATCCTTAGAAGACATCAACAAAATACAAGACCTGCCTGCTTACAATTTGTTGTAA

Predicted protein sequences of Glyma06g45080

Limit To All Plant Sequences

>Glyma06g45080.2   sequence type=predicted peptide   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLVPDCTLMRLRKRKRCFPSCSSLRKVDEDEIYWRHRKEDEELEWTPNSTHLISQLTQCFTNAMVGSRSWIGGLFNRTTTKRNDKFVDYPLIPIEEERLQRLQERLQVPYDETRPDHQESLRALWHCSFPNVSLEGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARKYPASFHKLLLKKDGNRATWEYPFAVAGINISFMLIQMLDLCSEKPRCIPGMNFVKLLGENEEAFDVLYCIAFEMMDAQWLALHASYMDFNDVLQATRMQLERELSLEDINKIQDLPAYNLL*

>Glyma06g45080.3   sequence type=predicted peptide   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGSRSWIGGLFNRTTTKRNDKFVDYPLIPIEEERLQRLQERLQVPYDETRPDHQESLRALWHCSFPNVSLEGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARKYPASFHKLLLKKDGNRATWEYPFAVAGINISFMLIQMLDLCSEKPRCIPGMNFVKLLGENEEAFDVLYCIAFEMMDAQWLALHASYMDFNDVLQATRMQLERELSLEDINKIQDLPAYNLL*

>Glyma06g45080.4   sequence type=predicted peptide   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGSRSWIGGLFNRTTTKRNDKFVDYPLIPIEEERLQRLQERLQVPYDETRPDHQESLRALWHCSFPNVSLEGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARKYPASFHKLLLKKDGNRATWEYPFAVAGINISFMLIQMLDLCSEKPRCIPGMNFVKLLGENEEAFDVLYCIAFEMMDAQWLALHASYMDFNDVLQATRMQLERELSLEDINKIQDLPAYNLL*

>Glyma06g45080.5   sequence type=predicted peptide   gene model=Glyma06g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGSRSWIGGLFNRTTTKRNDKFVDYPLIPIEEERLQRLQERLQVPYDETRPDHQESLRALWHCSFPNVSLEGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARKYPASFHKLLLKKDGNRATWEYPFAVAGINISFMLIQMLDLCSEKPRCIPGMNFVKLLGENEEAFDVLYCIAFEMMDAQWLALHASYMDFNDVLQATRMQLERELSLEDINKIQDLPAYNLL*

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