Glyma06g45043 - SoyBase

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Report for Sequence Feature Glyma06g45043

Feature Type:	gene_model
Chromosome:	Gm06
Start:	47840066
stop:	47847284
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g45043

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54160	AT	Annotation by Michelle Graham. TAIR10: O-methyltransferase 1 \| chr5:21982075-21984167 FORWARD LENGTH=363	SoyBase	E_val: 2.00E-75	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0051555	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonol biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0030744	GO-mf	Annotation by Michelle Graham. GO Molecular Function: luteolin O-methyltransferase activity	SoyBase	N/A	ISS
GO:0030755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-methyltransferase activity	SoyBase	N/A	ISS
GO:0033799	GO-mf	Annotation by Michelle Graham. GO Molecular Function: myricetin 3'-O-methyltransferase activity	SoyBase	N/A	ISS
GO:0047763	GO-mf	Annotation by Michelle Graham. GO Molecular Function: caffeate O-methyltransferase activity	SoyBase	N/A	ISS
KOG3178	KOG	Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases	JGI		ISS
PTHR11746	Panther	O-METHYLTRANSFERASE	JGI		ISS
PTHR11746:SF53	Panther	MAF PROTEIN	JGI		ISS
PF00891	PFAM	O-methyltransferase	JGI		ISS
PF08100	PFAM	Dimerisation domain	JGI		ISS
UniRef100_G9I8U0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Inositol methyltransferase n=1 Tax=Glycine max RepID=G9I8U0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G9I8U0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inositol methyltransferase n=1 Tax=Glycine max RepID=G9I8U0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g45043

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g45043 not represented in the dataset	Glyma06g45043 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g45043

Paralog	Evidence	Comments
Glyma12g12230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g45043 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g295700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g45043

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g45043

Limit To All Plant Sequences

>Glyma06g45043.2   sequence type=transcript   gene model=Glyma06g45043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTATACTAAAAAACTATACGATAGAAGAATGGCATAATCTATCAATCAATAACAAAGTTTATAATCTATCAATATTAATGTATATTTGAAAACTGTAAGATAGAAGAGTGGCATTGGACTGAGTCACTTTCCAATACCATGCCAGATTTTGTATAAAATCAAAATCTGGCTGAAATTCATGAAAGCTGCATTACACGGTTGATGTGTCCTTACATTACCAATAATGTTGTTCTAAAGCATAACACAAGCTTTATGTGTTCTGATCTGCACCACACACTGATCCATCACATAGCATCATAGCTTCTCAATAATTCAATTGCACGTTCCTGGAAACCTGTGATGTGAATCTCAACCGCACATTCCCTGCTACCTTATCAATTCGTGCATTCAACTGAAGCAATCAACCACACACGTCATGCTACTTATCATCTTTATTAACCGTTCATTTCCAAGCCAGTTTCACTCACCCCGCTGAACTCATCACTTACTGGAAGCCTTGTTGTGAGTAAGAGAAAAGGCTTCCTGCACCGAGCACACCAACTTGATACCTCTGATTCTTTCTTTGCTTAGAATTCCACAGAATATGGAGACTGTTCTTTTCAATCACTCCCCACCTTTGGAATTCAAGGGTTTGAGCAAGGAGGAGGAAGACTCATTGCTAGGGCAAGTGGAAATATGGAGGTACATGACATGCTTCACGGACTCCGTGGCCTTGAAAGCTGTCATAGAGCTTCGTATAGCGGACATACTAGACCGTTATGGTAAACCACTATCCTTGTCGCAAATTGTGGAGAACATAGAAGACGCACCCTCCCCAGATGCCTCTCTTCTCCAGAGAGTCCTGAGAGTGATGGTGCGCAGAAAGATCTTCAGTGCACAAGAATCAGAGACAGGAGAAACCCTCTTCGGCTTGACACGAGCCTCGAAGTGGATCCTTCGCGACACGAAAATGACCCTAGCACCCATGTTGCTGCTGGAGAACCACCCAATTCACCTGAACCCTGCGCACTACATCAGTGAGATTATTAGAGAAGGCACAAAAAATGGCACTGCTTTCTTTAAGTGCCATGGACATGAGCAATTTGAGATGACGGGTTTGGATCCTGAGTATAATAGGTTGTTCAATGAGGGCATGGTGTGCACTGCTAGGGTTGTGTCCAAGGCTGTGATCACTGGCTACAAAGATGGGTTCAACCAGATTAAGTCCTTGGTTGATGTTGGAGGTGGCATTGGAGGGTCTCTTTCGGAGATTGTTAGGGCTTATCCTCATATCAATGCCATCAACTTTGACTTGCCTCATGTGGTTGCCACTGCTCCTAAGTTCGATGGGATCACCCATGTTGGAGGTGACATGTTCGTGTCCATTCCTAGTGCTGATGCTATTTACATGAAGGTATATCAAAAACTGATCAATACCATATCTTCTTAAAATGCATGTGCTAATGGCTTATAACACTCTAACACACTACTTTTGCAAAAGTGATATTCGTACACTCATAATATTAGCTAGTTAACATTTAGTGAGTGAGAGAGAAAAATAATAAAAAATATATAAATATAACAAGTGATATCATGTAATTATAAAATGAGAAAAACAATGCATATTAATTTAGTATTTTAAAAAATAATTCTAGTTTTCATACATAAACATAATTAAATTTAATGTAATGAAATTTTATATCGTTGTATTACTAGTTTGAACTAGTTTGAGTTATAATGAGTCATAAATGCATAATTATGTACATCTTTTAAAAAAATTGAAAGAAAGGTATAAATAACTATTACCCAAGGTAATCCAAATGGTTAATATAATGATGTAAGATTTTATTGTATATATATATAAGTAATATATTTAATAAAAGAATTTGTATTTGATTTTGATCATGTATAAAGAAATTTTATATCAACAAAAATTATATATTATAAATAAAATTAGTCTCTAATCCGATAACTAATAACACAGAC

Coding sequences of Glyma06g45043

Limit To All Plant Sequences

>Glyma06g45043.1   sequence type=CDS   gene model=Glyma06g45043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACTGTTCTTTTCAATCACTCCCCACCTTTGGAATTCAAGGGTTTGAGCAAGGAGGAGGAAGACTCATTGCTAGGGCAAGTGGAAATATGGAGGTACATGACATGCTTCACGGACTCCGTGGCCTTGAAAGCTGTCATAGAGCTTCGTATAGCGGACATACTAGACCGTTATGGTAAACCACTATCCTTGTCGCAAATTGTGGAGAACATAGAAGACGCACCCTCCCCAGATGCCTCTCTTCTCCAGAGAGTCCTGAGAGTGATGGTGCGCAGAAAGATCTTCAGTGCACAAGAATCAGAGACAGGAGAAACCCTCTTCGGCTTGACACGAGCCTCGAAGTGGATCCTTCGCGACACGAAAATGACCCTAGCACCCATGTTGCTGCTGGAGAACCACCCAATTCACCTGAACCCTGCGCACTACATCAGTGAGATTATTAGAGAAGGCACAAAAAATGGCACTGCTTTCTTTAAGTGCCATGGACATGAGCAATTTGAGATGACGGGTTTGGATCCTGAGTATAATAGGTTGTTCAATGAGGGCATGGTGTGCACTGCTAGGGTTGTGTCCAAGGCTGTGATCACTGGCTACAAAGATGGGTTCAACCAGATTAAGTCCTTGGTTGATGTTGGAGGTGGCATTGGAGGGTCTCTTTCGGAGATTGTTAGGGCTTATCCTCATATCAATGCCATCAACTTTGACTTGCCTCATGTGGTTGCCACTGCTCCTAAGTTCGATGGGATCACCCATGTTGGAGGTGACATGTTCGTGTCCATTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTGCATGACTGGAGCGACGAGCACTGCATCAAGATCTTGAAGAACTGCAGGAAGGCAATACCAGAGAAGACAGGAAAAGTCATAATCGTGGATCACGTTCTTCGACCCGAAGGCAACGAACTCTTCACAGACGTTGGCATCGCATTCGACATGATGCTTCTCGCTCACAACGCCGGTGGCAAAGAGAGGACCGAAGAGAACTGGAAGTGGCTGTTCAAGGAAACCGGTTTCGCGCGTTACAACATCATCAAGATCAACGCTCTCCCTTCCATCATTGAGGCGTTTCCAATCTGA

>Glyma06g45043.2   sequence type=CDS   gene model=Glyma06g45043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACTGTTCTTTTCAATCACTCCCCACCTTTGGAATTCAAGGGTTTGAGCAAGGAGGAGGAAGACTCATTGCTAGGGCAAGTGGAAATATGGAGGTACATGACATGCTTCACGGACTCCGTGGCCTTGAAAGCTGTCATAGAGCTTCGTATAGCGGACATACTAGACCGTTATGGTAAACCACTATCCTTGTCGCAAATTGTGGAGAACATAGAAGACGCACCCTCCCCAGATGCCTCTCTTCTCCAGAGAGTCCTGAGAGTGATGGTGCGCAGAAAGATCTTCAGTGCACAAGAATCAGAGACAGGAGAAACCCTCTTCGGCTTGACACGAGCCTCGAAGTGGATCCTTCGCGACACGAAAATGACCCTAGCACCCATGTTGCTGCTGGAGAACCACCCAATTCACCTGAACCCTGCGCACTACATCAGTGAGATTATTAGAGAAGGCACAAAAAATGGCACTGCTTTCTTTAAGTGCCATGGACATGAGCAATTTGAGATGACGGGTTTGGATCCTGAGTATAATAGGTTGTTCAATGAGGGCATGGTGTGCACTGCTAGGGTTGTGTCCAAGGCTGTGATCACTGGCTACAAAGATGGGTTCAACCAGATTAAGTCCTTGGTTGATGTTGGAGGTGGCATTGGAGGGTCTCTTTCGGAGATTGTTAGGGCTTATCCTCATATCAATGCCATCAACTTTGACTTGCCTCATGTGGTTGCCACTGCTCCTAAGTTCGATGGGATCACCCATGTTGGAGGTGACATGTTCGTGTCCATTCCTAGTGCTGATGCTATTTACATGAAGGTATATCAAAAACTGATCAATACCATATCTTCTTAA

Predicted protein sequences of Glyma06g45043

Limit To All Plant Sequences

>Glyma06g45043.1   sequence type=predicted peptide   gene model=Glyma06g45043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METVLFNHSPPLEFKGLSKEEEDSLLGQVEIWRYMTCFTDSVALKAVIELRIADILDRYGKPLSLSQIVENIEDAPSPDASLLQRVLRVMVRRKIFSAQESETGETLFGLTRASKWILRDTKMTLAPMLLLENHPIHLNPAHYISEIIREGTKNGTAFFKCHGHEQFEMTGLDPEYNRLFNEGMVCTARVVSKAVITGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHINAINFDLPHVVATAPKFDGITHVGGDMFVSIPSADAIYMKWILHDWSDEHCIKILKNCRKAIPEKTGKVIIVDHVLRPEGNELFTDVGIAFDMMLLAHNAGGKERTEENWKWLFKETGFARYNIIKINALPSIIEAFPI*

>Glyma06g45043.2   sequence type=predicted peptide   gene model=Glyma06g45043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METVLFNHSPPLEFKGLSKEEEDSLLGQVEIWRYMTCFTDSVALKAVIELRIADILDRYGKPLSLSQIVENIEDAPSPDASLLQRVLRVMVRRKIFSAQESETGETLFGLTRASKWILRDTKMTLAPMLLLENHPIHLNPAHYISEIIREGTKNGTAFFKCHGHEQFEMTGLDPEYNRLFNEGMVCTARVVSKAVITGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHINAINFDLPHVVATAPKFDGITHVGGDMFVSIPSADAIYMKVYQKLINTISS*

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