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Report for Sequence Feature Glyma06g44800

Feature Type:gene_model
Chromosome:Gm06
Start:47630207
stop:47631712
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g44800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03650AT Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:910249-911103 REVERSE LENGTH=158 SoyBaseE_val: 1.00E-66ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008080GO-mf Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity SoyBaseN/AISS
KOG3139 KOG N-acetyltransferase JGI ISS
PTHR23091Panther N-TERMINAL ACETYLTRANSFERASE JGI ISS
PTHR23091:SF20Panther SUBFAMILY NOT NAMED JGI ISS
PF00583PFAM Acetyltransferase (GNAT) family JGI ISS
UniRef100_G7ZX36UniRef Annotation by Michelle Graham. Most informative UniRef hit: N-acetyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7ZX36_MEDTR SoyBaseE_val: 9.00E-88ISS
UniRef100_I1KF23UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KF23_SOYBN SoyBaseE_val: 2.00E-111ISS

Expression Patterns of Glyma06g44800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g44800 not represented in the dataset
Glyma06g44800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g44800
ParalogEvidenceComments
Glyma12g12540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g44800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g293600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g44800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g44800
>Glyma06g44800.2   sequence type=transcript   gene model=Glyma06g44800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGATGCTAGACGTGGAGAGAGAGGACCAAATCCACGTTTACTAAATCTTTTTCAAACACACTAGTTTAAGACATAGAAAAGTCTCAAGTTCTGTTTTAACTCGACACTGACGAATCATGGCGAATGTGGCGATTCTTGAGCTCAATGGAAACTGTGGTAATACAGTGGAAGAGATAGTGAAAATGGAGAGAGAGATCTTTCCCGAGCACGAATCACTGACTTCATTCTTTCACGATGAACTTAGAAAGAAGAACAGTGGATTGCTTTATCTTCACGTGGATGGCGAACTTGTAGGCTATGTCATGTATTCTTGGCCTTCTTCCTCGTATGCCACTATCACCGAGCTCGCAGTTAAGGAGCAATGGAGGGGACAAGGCCACGGAGAGGCTTTGTTGAAAGCAGCAATTCAGAAATGCAGTACAACGAAAGTTTTGCGCATAATGCTTCATGTGGATCCCTTGAGGACTCCTGCAGTGAATCTTTACAAGAAACATGGTTTCCAAGTTGACACTTTGGTTGAAGGGTACTACTCCTCAGATAGAAATGCTTATAGAATGTACTTGGACTTCGATTCAAGTTGAAGGAGAAAATGAATAACATTTGACACATGATCTGTGGTTAATTTAAAGAACAATTTAATAACAGATGAAGGACAAGCATTTTAATAAAGAGGGCTTGTAGTTTTTACTTTTGTTTTCCAAACAGAAAATGGAAGATCTATGTTCTGCAATTGTCTGTACTACTAGACTACTAGTACATGCGTTGTCAATGACAGGTAACATTGTGAACATGTCTAAAGAAACTATAGAAAGATTGATGATTAAGAAGGTGGAAATGCTTAAAATAATTTTGAACCTTCTATTGATAGTTGAAATATTTTGAGTTTACG

>Glyma06g44800.3   sequence type=transcript   gene model=Glyma06g44800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGATGCTAGACGTGGAGAGAGAGGACCAAATCCACGTTTACTAAATCTTTTTCAAACACACTAGTTTAAGACATAGAAAAGTGCGTCTCAAGTTCTGTTTTAACTCGACACTGACGAATCATGGCGAATGTGGCGATTCTTGAGCTCAATGGAAACTGTGGTAATACAGTGGAAGAGATAGTGAAAATGGAGAGAGAGATCTTTCCCGAGCACGAATCACTGACTTCATTCTTTCACGATGAACTTAGAAAGAAGAACAGTGGATTGCTTTATCTTCACGTGGATGGCGAACTTGTAGGCTATGTCATGTATTCTTGGCCTTCTTCCTCGTATGCCACTATCACCGAGCTCGCAGTTAAGGAGCAATGGAGGGGACAAGGCCACGGAGAGGCTTTGTTGAAAGCAGCAATTCAGAAATGCAGTACAACGAAAGTTTTGCGCATAATGCTTCATGTGGATCCCTTGAGGACTCCTGCAGTGAATCTTTACAAGAAACATGGTTTCCAAGTTGACACTTTGGTTGAAGGGTACTACTCCTCAGATAGAAATGCTTATAGAATGTACTTGGACTTCGATTCAAGTTGAAGGAGAAAATGAATAACATTTGACACATGATCTGTGGTTAATTTAAAGAACAATTTAATAACAGATGAAGGACAAGCATTTTAATAAAGAGGGCTTGTAGTTTTTACTTTTGTTTTCCAAACAGAAAATGGAAGATCTATGTTCTGCAATTGTCTGTACTACTAGACTACTAGTACATGCGTTGTCAATGACAGGTAACATTGTGAACATGTCTAAAGAAACTATAGAAAGATTGATGATTAAGAAGGTGGAAATGCTTAAAATAATTTTGAACCTTCTATTGATAGTTGAAATATTTTGAGTTTACG
Coding sequences of Glyma06g44800
>Glyma06g44800.1   sequence type=CDS   gene model=Glyma06g44800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATGTGGCGATTCTTGAGCTCAATGGAAACTGTGGTAATACAGTGGAAGAGATAGTGAAAATGGAGAGAGAGATCTTTCCCGAGCACGAATCACTGACTTCATTCTTTCACGATGAACTTAGAAAGAAGAACAGTGGATTGCTTTATCTTCACGTGGATGGCGAACTTGTAGGCTATGTCATGTATTCTTGGCCTTCTTCCTCGTATGCCACTATCACCGAGCTCGCAGTTAAGGAGCAATGGAGGGGACAAGGCCACGGAGAGGCTTTGTTGAAAGCAGCAATTCAGAAATGCAGTACAACGAAAGTTTTGCGCATAATGCTTCATGTGGATCCCTTGAGGACTCCTGCAGTGAATCTTTACAAGAAACATGGTTTCCAAGTTGACACTTTGGTTGAAGGGTACTACTCCTCAGATAGAAATGCTTATAGAATGTACTTGGACTTCGATTCAAGTTGA

>Glyma06g44800.2   sequence type=CDS   gene model=Glyma06g44800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATGTGGCGATTCTTGAGCTCAATGGAAACTGTGGTAATACAGTGGAAGAGATAGTGAAAATGGAGAGAGAGATCTTTCCCGAGCACGAATCACTGACTTCATTCTTTCACGATGAACTTAGAAAGAAGAACAGTGGATTGCTTTATCTTCACGTGGATGGCGAACTTGTAGGCTATGTCATGTATTCTTGGCCTTCTTCCTCGTATGCCACTATCACCGAGCTCGCAGTTAAGGAGCAATGGAGGGGACAAGGCCACGGAGAGGCTTTGTTGAAAGCAGCAATTCAGAAATGCAGTACAACGAAAGTTTTGCGCATAATGCTTCATGTGGATCCCTTGAGGACTCCTGCAGTGAATCTTTACAAGAAACATGGTTTCCAAGTTGACACTTTGGTTGAAGGGTACTACTCCTCAGATAGAAATGCTTATAGAATGTACTTGGACTTCGATTCAAGTTGA

>Glyma06g44800.3   sequence type=CDS   gene model=Glyma06g44800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATGTGGCGATTCTTGAGCTCAATGGAAACTGTGGTAATACAGTGGAAGAGATAGTGAAAATGGAGAGAGAGATCTTTCCCGAGCACGAATCACTGACTTCATTCTTTCACGATGAACTTAGAAAGAAGAACAGTGGATTGCTTTATCTTCACGTGGATGGCGAACTTGTAGGCTATGTCATGTATTCTTGGCCTTCTTCCTCGTATGCCACTATCACCGAGCTCGCAGTTAAGGAGCAATGGAGGGGACAAGGCCACGGAGAGGCTTTGTTGAAAGCAGCAATTCAGAAATGCAGTACAACGAAAGTTTTGCGCATAATGCTTCATGTGGATCCCTTGAGGACTCCTGCAGTGAATCTTTACAAGAAACATGGTTTCCAAGTTGACACTTTGGTTGAAGGGTACTACTCCTCAGATAGAAATGCTTATAGAATGTACTTGGACTTCGATTCAAGTTGA
Predicted protein sequences of Glyma06g44800
>Glyma06g44800.1   sequence type=predicted peptide   gene model=Glyma06g44800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANVAILELNGNCGNTVEEIVKMEREIFPEHESLTSFFHDELRKKNSGLLYLHVDGELVGYVMYSWPSSSYATITELAVKEQWRGQGHGEALLKAAIQKCSTTKVLRIMLHVDPLRTPAVNLYKKHGFQVDTLVEGYYSSDRNAYRMYLDFDSS*

>Glyma06g44800.2   sequence type=predicted peptide   gene model=Glyma06g44800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANVAILELNGNCGNTVEEIVKMEREIFPEHESLTSFFHDELRKKNSGLLYLHVDGELVGYVMYSWPSSSYATITELAVKEQWRGQGHGEALLKAAIQKCSTTKVLRIMLHVDPLRTPAVNLYKKHGFQVDTLVEGYYSSDRNAYRMYLDFDSS*

>Glyma06g44800.3   sequence type=predicted peptide   gene model=Glyma06g44800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANVAILELNGNCGNTVEEIVKMEREIFPEHESLTSFFHDELRKKNSGLLYLHVDGELVGYVMYSWPSSSYATITELAVKEQWRGQGHGEALLKAAIQKCSTTKVLRIMLHVDPLRTPAVNLYKKHGFQVDTLVEGYYSSDRNAYRMYLDFDSS*






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