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Report for Sequence Feature Glyma06g44701

Feature Type:gene_model
Chromosome:Gm06
Start:47550964
stop:47554407
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g44701
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53590AT Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:19996556-20000127 FORWARD LENGTH=751 SoyBaseE_val: 8.00E-43ISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PTHR16122Panther MCTP-RELATED JGI ISS
PTHR16122:SF13Panther SUBFAMILY NOT NAMED JGI ISS
PF00168PFAM C2 domain JGI ISS
UniRef100_B9GGX9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Integral membrane single C2 domain protein n=1 Tax=Populus trichocarpa RepID=B9GGX9_POPTR SoyBaseE_val: 1.00E-42ISS
UniRef100_I1MIZ6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIZ6_SOYBN SoyBaseE_val: 6.00E-56ISS

Expression Patterns of Glyma06g44701
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g44701 not represented in the dataset
Glyma06g44701 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g44701 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g292000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g44701
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g44701
>Glyma06g44701.1   sequence type=CDS   gene model=Glyma06g44701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGTTGAAGGGAAGGTCTTAATTGGGGTAAAGTTTCTCCCGACATGGTCTTTTATTGGCTATTTGCGTGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTATCAATCCTGATAAGCCGTTGTCAATTGCTTTTGAACAAACCCTTGTTGAGACTTTTGCAATAATCGATTTACTGGGTAGCCCTGGGATTCTACTTGGGGTATCCCTTACCTGTGATTCTTATGATCTTCTTCTCTTAGAATTTTTATTTGTGAAAGTTCAAATGGGTGTATACAAATTCAGGACAAAAATACAAAGGAAAACACTTACTCCAAAATGGCATGAGGAATTTAAAATTCCCATCATAACATGTGAGTCTGACAATGTGCTGGTTATTGCAGTTCGTGACAAGGATCATTTCTATGATGATATCCTTGGGTTTGTTCCATTTTATAAACTTTGTATTTTTTAA
Predicted protein sequences of Glyma06g44701
>Glyma06g44701.1   sequence type=predicted peptide   gene model=Glyma06g44701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHVEGKVLIGVKFLPTWSFIGYLRVCFVEPPYFQMTINPDKPLSIAFEQTLVETFAIIDLLGSPGILLGVSLTCDSYDLLLLEFLFVKVQMGVYKFRTKIQRKTLTPKWHEEFKIPIITCESDNVLVIAVRDKDHFYDDILGFVPFYKLCIF*






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