Glyma06g44640 - SoyBase

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Report for Sequence Feature Glyma06g44640

Feature Type:	gene_model
Chromosome:	Gm06
Start:	47505012
stop:	47508110
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g44640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49190	AT	Annotation by Michelle Graham. TAIR10: O-acyltransferase (WSD1-like) family protein \| chr3:18231988-18234376 REVERSE LENGTH=522	SoyBase	E_val: 4.00E-52	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity	SoyBase	N/A	ISS
PF03007	PFAM	Uncharacterised protein family (UPF0089)	JGI		ISS
PF06974	PFAM	Protein of unknown function (DUF1298)	JGI		ISS
UniRef100_G7JTU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: O-acyltransferase WSD1 n=1 Tax=Medicago truncatula RepID=G7JTU9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KF12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KF12_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g44640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g44640

Paralog	Evidence	Comments
Glyma12g12915	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g44640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g291700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g44640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g44640

Limit To All Plant Sequences

>Glyma06g44640.1   sequence type=CDS   gene model=Glyma06g44640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAATTCTATGAAGAGGTTCAAGAGCCAGTGAGTCCTCATGGACATTATTTCAACAGTTCGGTGATATGTTCCTATGTTTTTGGCTTTCTTGAAATGGCAGTTCCAATTGATGACTCACAGACTATACCTTTGCTTGAAGATGTCTTCCTCCCCATCAACCCACGTTTCTCCTCTATTATGATCAGAGACCAAGCTGGTAAAATGAGATGGAAAAGGGTGCAAGTGAATCCTGAAGAGCATGTAAAGGTTCCTAGATTTCCTGAATGCAATTCAGCAGAATTGTATGACCATTATTTTGATGAATATGTGACAAGGATTCTAAATGAACGGACACCTCAGAACAAGCCACTATGGGAAGTCCACCTTATTAAGTATCCAACAAGCAATGCTGCAGGCACAATAATTTTCAAATTTCATCATTCGCTTGGAGATGGTTATTCCCTCATGGGTGCCCTTCTTTCTTGCCTTCAAAGAACTGATGACCCTTCTCTTCCACTTACTTTTCCTTCAAGAGTATCATCAAATCCGCAGCATGCAAAGAAAACCATATTTAAGAAGTTACATTCAGTGATATCCTCCTTTTTTAGCTCCATGTTAGATTTTGGATCTAGCGTAATAAAGGCAAAAATGATTGAAGATGACAAAACACCCATAAGGTCTGGATATGAAGGAACTAAGCCTCAGCATTTCACCTTGTCAAACATATCATTATCTCTTGATCATATCAAAGCAATCAAGTCCAATCTTGGAGTGACAATAAATGATGTGATAACTGGGATAATTTTCTATGGGATTCGGTTGTACATGCAAGAGATTGACTACATGACAAGAAAAGCAAATTCCACAGCTTTGGTGGTGCTCAACACAAGGAATATTAGAGGGTACCAATCAGTGAAGGAGATGCAAAAACCAAAGGTCAAAGGTCTATGGGGGAATAAAATTTCTTTCTTACAAATACCAATTCCAAAGCTAGACCAACCCAAAATCTCCAACCCTCTTGAGTTTGTTTGGAATGCTCGTAAACAAATCAAGAGAAAGAAACATTCTTTCAGCGTTTATCTCATAGGTCTGCTTTTGGATTTGGAGATGAAATTAAGAGGCCCTGAGGTTGCATCTAAAACCTTCTACAATACTCTGGGAAACTGTAGTGTTCTTATATCCAACATGTTTGGGCCATTAGAGCAAATGGCTTTAGCAAATCATCCTGTAAGAGGTGTTTATTTCGCCATGTCTGGTGGACCTCAGAATGTAAACGTAGCAATTATGAGCTATGTGGGAGAATTAAGAATCACCTTGAAAACTCTAAAGGGATTCATAGATGAACAGAAATTCAAGTTTTGCATTGAGAAAGCCTTTGATGAAATATTCAAAGATGCTATGGAGATCTATGAGATACCCAACAAAATTTAA

Predicted protein sequences of Glyma06g44640

Limit To All Plant Sequences

>Glyma06g44640.1   sequence type=predicted peptide   gene model=Glyma06g44640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQFYEEVQEPVSPHGHYFNSSVICSYVFGFLEMAVPIDDSQTIPLLEDVFLPINPRFSSIMIRDQAGKMRWKRVQVNPEEHVKVPRFPECNSAELYDHYFDEYVTRILNERTPQNKPLWEVHLIKYPTSNAAGTIIFKFHHSLGDGYSLMGALLSCLQRTDDPSLPLTFPSRVSSNPQHAKKTIFKKLHSVISSFFSSMLDFGSSVIKAKMIEDDKTPIRSGYEGTKPQHFTLSNISLSLDHIKAIKSNLGVTINDVITGIIFYGIRLYMQEIDYMTRKANSTALVVLNTRNIRGYQSVKEMQKPKVKGLWGNKISFLQIPIPKLDQPKISNPLEFVWNARKQIKRKKHSFSVYLIGLLLDLEMKLRGPEVASKTFYNTLGNCSVLISNMFGPLEQMALANHPVRGVYFAMSGGPQNVNVAIMSYVGELRITLKTLKGFIDEQKFKFCIEKAFDEIFKDAMEIYEIPNKI*

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