Glyma06g44520 - SoyBase

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Report for Sequence Feature Glyma06g44520

Feature Type:	gene_model
Chromosome:	Gm06
Start:	47420665
stop:	47422157
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g44520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28380	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr4:14039756-14040931 REVERSE LENGTH=391	SoyBase	E_val: 2.00E-172	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF665	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_B9RVW8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RVW8_RICCO	SoyBase	E_val: 3.00E-174	ISS
UniRef100_I1KF04	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KF04_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g44520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g44520

Paralog	Evidence	Comments
Glyma12g13230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g44520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g290700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g44520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g44520

Limit To All Plant Sequences

>Glyma06g44520.2   sequence type=CDS   gene model=Glyma06g44520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAGCTTCAGCATCTTATTCCTTTACCATCAGTGTGCTATTCCTCATTTTTGTGCACTTGTCATGTTTCATAAACAACCTCAATGCAAAGCACACCAATGCCAGCAGTCACAACCATCATCACAAACACCAACACACTCAGAATCCTTCCTTGAACACAAGGCTTCACATGGCGTTTCTTGGCCTACAAGCATGGAAGCAAGTGATCTACTCAGACCCAAATAACTTCACTTCCAACTGGGTAGGTCCTTCAGTTTGCAACTACACAGGTGTGTTCTGTGCTCCCTCACTTGATGACCCTAAAGTGACAGTTGTGGCTGGCATTGACCTTAACTTCGCAGACTTAGCAGGGTTCCTACCCAATGAAATAGGCCTTCTATCAGACCTTGCAGTCCTTCATCTCAGCAACAACCGTTTCTGTGGAATCCTCCCAAAGTCCTTCACAAACCTAACTCTACTCTATGAGCTTGATCTTAGCAACAACAGATTTGTAGGACCTTTTCCTTTGGTTGTGTTTTCCCTTCCTTTGCTCAAATACCTCGACCTTCGCTACAACGAGTTCGAAGGGCCGTTGCCTCCTCAACTCTTCAACAACACCATTGATGCAATCTTTGTTAACAACAACCGCTTCATAAGCACTATTCCACCAAACTTAGGAAAAATCTCAGCTTCTGTCCTTGTCTTTGCCAACAACAAATTTGGAGGGTGTCTTCCAGAAAGCATAGTGAACTTTGCTGACACTTTGGAGGAGCTTGTGCTAATCAACACAAGCTTGTCAGGGTGTTTGCCACAACAACTGGGGTTTCTCTACAAACTAAGAGTGTTGGATGTGAGTTTCAATAGTATTGTTGGCCCTATACCTTATAGCCTTTCAGGGTTGTCTCACTTGGAGCAATTGAATTTGGGGCATAACATGATGAGTGGCACTGTCCCTGTGGGGGTTTGTGAGTTGCCAAACTTGGCAAACTTCACTTTCTCTTACAACTTCTTCTGTGAGGAAGAGGGTATTTGTAAGAACTTGACATCAAAGAGGATAGTGTTTGATGATAGGAGGAACTGTTTGCCAGAGAAGCCATTGCAGAGGAGTGAAAAGGAATGCAAGGCAAAACTTGAACACCCAGTTGATTGCTCTGAGCTTTGTTGTGTTGTTGGGAGCAATAATAATAATGTCTCTGCTGCTGGCTCAGTGGCTGTTCCACCTGCAGCAGCAGCAATGCCTGTGTCTGCACCTCTTCTTGCACCAAGCCACCCTTAA

Predicted protein sequences of Glyma06g44520

Limit To All Plant Sequences

>Glyma06g44520.2   sequence type=predicted peptide   gene model=Glyma06g44520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASASYSFTISVLFLIFVHLSCFINNLNAKHTNASSHNHHHKHQHTQNPSLNTRLHMAFLGLQAWKQVIYSDPNNFTSNWVGPSVCNYTGVFCAPSLDDPKVTVVAGIDLNFADLAGFLPNEIGLLSDLAVLHLSNNRFCGILPKSFTNLTLLYELDLSNNRFVGPFPLVVFSLPLLKYLDLRYNEFEGPLPPQLFNNTIDAIFVNNNRFISTIPPNLGKISASVLVFANNKFGGCLPESIVNFADTLEELVLINTSLSGCLPQQLGFLYKLRVLDVSFNSIVGPIPYSLSGLSHLEQLNLGHNMMSGTVPVGVCELPNLANFTFSYNFFCEEEGICKNLTSKRIVFDDRRNCLPEKPLQRSEKECKAKLEHPVDCSELCCVVGSNNNNVSAAGSVAVPPAAAAMPVSAPLLAPSHP*

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