Glyma06g44250 - SoyBase

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Report for Sequence Feature Glyma06g44250

Feature Type:	gene_model
Chromosome:	Gm06
Start:	47181313
stop:	47184811
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g44250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28500	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 73 \| chr4:14083014-14084266 FORWARD LENGTH=305	SoyBase	E_val: 5.00E-117	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:2000652	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B9RVT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RVT0_RICCO	SoyBase	E_val: 8.00E-144	ISS
UniRef100_I1KEX6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KEX6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g44250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g44250

Paralog	Evidence	Comments
Glyma12g13710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g44250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g288500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g44250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g44250

Limit To All Plant Sequences

>Glyma06g44250.3   sequence type=transcript   gene model=Glyma06g44250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGACAAAATCACTTGCAAAAACTAAAGGGGACGAAAAACCCTTCATTTATTCTTCTACAAGTTTTCACATACCATATATACAAAGTTATTGGGAAGGACTGCAATATTATTCACTTCTCATGCAAAAGTGAGAGAGAATTTAATACTTTTCCACTACACCTTAACAAGTAGTGGCATGAAGCAGCAGAAGAGGGAAACAAAGGAAAAGAGGGTCTCCATAAATGAAATGAGTGAGGGAGAGAACAGAAAATTACAAGGAAATGACTCAGTGCAGTGACTCTGAAAACAATCATCATAACATCATAGTGGAGGGACGAAAAGATAGCTTAATCAGAACTTGTCCTACTTGTGGTCACCATATCAAATGCCAAGAACAGGGTGGTGGAATTCATGACTTGCCTGGACTGCCTGCTGGAGTGAAGTTTGATCCCACGGATCAAGAGATTCTTGAACATTTAGAAGCGAAGGTGCGATCTGATATTCATAAGCTTCATCCCCTAATTGATGAGTTCATTCCAACTCTTGAAGGCGAAAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTGATCCGGCATTTCTTTCACAGGCCTTCCAAGGCATACACAACAGGAACAAGGAAAAGGAGAAAGGTGCACTCAGATGAAGATGGAAGTGAGACACGTTGGCACAAAACTGGTAAAACCAGGCCAGTCTACAACATTGCCAAGTTGAAAGGTTACAAGAAAATCCTTGTGCTTTACACAAACTATGGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTCATGCACCAATACCACCTTGGCAGTGATGAAGAGGAGAAAGAAGGGGAGCTAGTGGTCTCCAAGGTTTTCTACCAAACACAACCTAGACAATGTGGTTCCCTCATGAAAGATTCATCAGTTCCTCCTGGGAAACATATGAAGGGTCAAAGTGTGCATGTTGAGGTAATGAATAATAACAAAAACAGCAACAATAATGGGTATGTTGAGTACTACCATTCTTCAAATTTCATATCTTTTGATCAAGGAGGGCAAAATGCTCAAGTAATTTCTCATTTTCCTGTCCATGAAGGTGCTCCTTTCATTCCTTGAATGAAGTGGTGGAGAGTTATAAGGTGAAAGGTTATGGAGAAAATATATTAAATATATACACATAGAATATTCATAATATTGAGGCATTACAATTATATATTATGCAAAAATAAAATAAGTTAATAACCTACTGTCGTTAGGATGGGGAAAGGTGGGCAAGAATAAGGAGAGAAATTGCTTTATTTGAAAATTAATGCATAGAGATATGATACTCGATTAAGGAAGAAAGAGATCGGGAGGTAAAGAAGAAGATTTAGGTATGTAACACTTTTCTTCCTTTGTTCCCTCTCTTTATATTTTTTTGATGGTACGCACTTAGTTTCTACATATCATGCTTTGTACAGTAGTGTCAAAGGCATCATGCCCTTGCTTGTGTAATTAAAGACTAACCATCAACCTGTACAAACATGACTTTTACCTTAAGAAGTCTTGATCGAACTACAGAATATTTTTGTTTTCCTTGTTCCCTGAAGTTTTAATTTATTGTAAACGTGATTATGTTTAATTATTGTCTTT

Coding sequences of Glyma06g44250

Limit To All Plant Sequences

>Glyma06g44250.2   sequence type=CDS   gene model=Glyma06g44250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAGTGCAGTGACTCTGAAAACAATCATCATAACATCATAGTGGAGGGACGAAAAGATAGCTTAATCAGAACTTGTCCTACTTGTGGTCACCATATCAAATGCCAAGAACAGGGTGGTGGAATTCATGACTTGCCTGGACTGCCTGCTGGAGTGAAGTTTGATCCCACGGATCAAGAGATTCTTGAACATTTAGAAGCGAAGGTGCGATCTGATATTCATAAGCTTCATCCCCTAATTGATGAGTTCATTCCAACTCTTGAAGGCGAAAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTGATCCGGCATTTCTTTCACAGGCCTTCCAAGGCATACACAACAGGAACAAGGAAAAGGAGAAAGGTGCACTCAGATGAAGATGGAAGTGAGACACGTTGGCACAAAACTGGTAAAACCAGGCCAGTCTACAACATTGCCAAGTTGAAAGGTTACAAGAAAATCCTTGTGCTTTACACAAACTATGGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTCATGCACCAATACCACCTTGGCAGTGATGAAGAGGAGAAAGAAGGGGAGCTAGTGGTCTCCAAGGTTTTCTACCAAACACAACCTAGACAATGTGGTTCCCTCATGAAAGATTCATCAGTTCCTCCTGGGAAACATATGAAGGGTCAAAGTGTGCATGTTGAGGTAATGAATAATAACAAAAACAGCAACAATAATGGGTATGTTGAGTACTACCATTCTTCAAATTTCATATCTTTTGATCAAGGAGGGCAAAATGCTCAAGTAATTTCTCATTTTCCTGTCCATGAAGGTGCTCCTTTCATTCCTTGA

>Glyma06g44250.3   sequence type=CDS   gene model=Glyma06g44250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAGTGCAGTGACTCTGAAAACAATCATCATAACATCATAGTGGAGGGACGAAAAGATAGCTTAATCAGAACTTGTCCTACTTGTGGTCACCATATCAAATGCCAAGAACAGGGTGGTGGAATTCATGACTTGCCTGGACTGCCTGCTGGAGTGAAGTTTGATCCCACGGATCAAGAGATTCTTGAACATTTAGAAGCGAAGGTGCGATCTGATATTCATAAGCTTCATCCCCTAATTGATGAGTTCATTCCAACTCTTGAAGGCGAAAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTGATCCGGCATTTCTTTCACAGGCCTTCCAAGGCATACACAACAGGAACAAGGAAAAGGAGAAAGGTGCACTCAGATGAAGATGGAAGTGAGACACGTTGGCACAAAACTGGTAAAACCAGGCCAGTCTACAACATTGCCAAGTTGAAAGGTTACAAGAAAATCCTTGTGCTTTACACAAACTATGGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTCATGCACCAATACCACCTTGGCAGTGATGAAGAGGAGAAAGAAGGGGAGCTAGTGGTCTCCAAGGTTTTCTACCAAACACAACCTAGACAATGTGGTTCCCTCATGAAAGATTCATCAGTTCCTCCTGGGAAACATATGAAGGGTCAAAGTGTGCATGTTGAGGTAATGAATAATAACAAAAACAGCAACAATAATGGGTATGTTGAGTACTACCATTCTTCAAATTTCATATCTTTTGATCAAGGAGGGCAAAATGCTCAAGTAATTTCTCATTTTCCTGTCCATGAAGGTGCTCCTTTCATTCCTTGA

Predicted protein sequences of Glyma06g44250

Limit To All Plant Sequences

>Glyma06g44250.2   sequence type=predicted peptide   gene model=Glyma06g44250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQCSDSENNHHNIIVEGRKDSLIRTCPTCGHHIKCQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNIAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSLMKDSSVPPGKHMKGQSVHVEVMNNNKNSNNNGYVEYYHSSNFISFDQGGQNAQVISHFPVHEGAPFIP*

>Glyma06g44250.3   sequence type=predicted peptide   gene model=Glyma06g44250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQCSDSENNHHNIIVEGRKDSLIRTCPTCGHHIKCQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNIAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSLMKDSSVPPGKHMKGQSVHVEVMNNNKNSNNNGYVEYYHSSNFISFDQGGQNAQVISHFPVHEGAPFIP*

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