Glyma06g44023 - SoyBase

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Report for Sequence Feature Glyma06g44023

Feature Type:	gene_model
Chromosome:	Gm06
Start:	47011442
stop:	47018464
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g44023

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39200	AT	Annotation by Michelle Graham. TAIR10: Seven transmembrane MLO family protein \| chr2:16356255-16359797 REVERSE LENGTH=576	SoyBase	E_val: 2.00E-154	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF03094	PFAM	Mlo family	JGI		ISS
UniRef100_G7JUX8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein n=1 Tax=Medicago truncatula RepID=G7JUX8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339896	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339896 related cluster n=1 Tax=unknown RepID=UPI0002339896	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g44023

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g44023 not represented in the dataset	Glyma06g44023 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g44023

Paralog	Evidence	Comments
Glyma12g13935	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g44023 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g286800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g44023

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g44023

Limit To All Plant Sequences

>Glyma06g44023.2   sequence type=transcript   gene model=Glyma06g44023   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCCTCACCCACTTGAGCTTGGCACAGCTCTTTAGCATATCCTCCTCCTTAATTTTGCCCTCACTTAATCATATAGTATCATATATTATCATGGATATGTATGCATACTTAACATAACAGGAGGTGTTCTCTTTTCTTTTCTCAAAGGAGAGAATATGTATATTTTTGGCAGAAATTAAACTAAGGAAATTAACGAAGATTAAAGGCGAGTTCTCTTATTATGGACATAGGAAAAGAAAGATCCCTTGAAGAAACACCAACATGGGCTGTCTCAGTCTTTTGCTTCTTCTTTCTTATGATATCTTTGATCATTGAGGGAGGTCTCCACAAATTGGCTGAGATTTTCAGGAAAAGGAAAGAAAAATCCCTAGGGAAGGCTTTGACTAAAACCAAAACAGTGCCAATATCCAAAATCTGCATCAGCAAGGGAGTGGCAAATTCTTTTCTCCCATGTAAAGATGTTGTGGACTTCACAGGATCTGCTACTCGTACTTCAACCTCAGGATTGGACGTAGCACCTGCTACCAATGAATCCGCCATTGAAGTCAACTATTGTGAAGCAAAGGGCATGGTTAGTTTAATTTCAAGTGATGGAATCCTGCAGCTAAACATTTTCATCTCCTTTTTGGCCGTGTTTCACATTTTGTTCTGCACATTGACAATGTGCCTTGGAAAGGCAAAGATGAGAAGATGGAAGAGATGGGAGGATGAGACCCAAACACTTGAATATCAGATAGCTAATGATCCAAGAAGGTTCCAGTATACAGGTCAAACATTGATTGGGAAGCGTCATTTGAAATTCTGGAGCTATCATTCTCCTTTGCTTTGGATGGTTTGCTTTATTCGGCAGTTCTACGGATCAGTATCAAAAGATGATTACTTCACTCTACGAAATGGTTTCATTGCAGCTAATATTTCTTTAGGAAGCAATTTCAACTTCAAGAAATTTCTTTCCCGCACTTATGATGAAGATTTTGAGAAAGTTATGGGAATCAGGATTTGGATCTGGATTTTCTCCATACTTTTCATATTTTTTAGCGCGCACGAGTTCTATAATTACTATTGGCTTCCATTTATTCCACTTGTGGTTGCTTTACTTGCTGGGACAAAACTACAAGTAATAATAACAAAGATGTGTGTGGATAGTTGCAAGGAAAAGTCAGTGATCAAAGGAAGTCTACTTGTAACACCTAGTGATGCCCATTTCTGGTTTCATAGACCTGAATGGCTTCTCCATTTACTCAAGTTCATCCTTATCCAGAACTCCTTTCAACTTGCATTCTTCACCTGGACTTGGTATGAATTTGGTCCAAGGTCTTGCTTCAATCGAAAAAGAGAGGACATTGGCATAAGGATTGTCATGGGTGTAGCTGTGCAGCTCTTTTGTGGCTATGTGACATTGCCCCTTTATGCACTTGTTACTCAGATGGGTTCTAGCATGAGGAGAGAAATTTTCACTGAGAGGGTTTCTAGGGACCTAAAAAATTGGCACAAAAGAGCTAAACAATCTGTGTCCAAAAACAACTCAACTTCAAGCAAACACTCAGATACTTTGCATTCCAAAGAATGTGACAATTCAGTAAGAGGATCAGTGGATATTGTGCACACCTCAGATAATGTAGTGCTCACAAGCCCTCCTTCTCACATGATAAGTGGAGAGGAGGAAAAGAGCATTGCACCAACCAATGAACAAGAGATATCAAGTAACTCCACTTCAGAAATAATCAAAACTACTCAGGAAGAGAATCCCAAGATCATCACCAGAGGAACCTATGACGGTGAGATCTCATTTGGAAGCAGCTGGAAGAATGTGGGAAGTAGCAGGGGCATTGGAGAAATTGGTTCAATAATTGAAGAAGATGATGCTGAAAAATTGCCTGAGTTGATTCCATAAGGACACTATAATATTAATCTCAACGAAATTGTCTCTATAAGACAATTCTAAAAACTAATAGCCCTTGCTTATATCTTATTAAAGTGTCAACAGCAATCAAATTAATCACCTACCCTTTTTACCTCTACCCTTTCTTCTGTCCCTAAATTGAAAATTAACACCAGTAAGAAAATTTCTTTCTCTTGTTGTGACA

Coding sequences of Glyma06g44023

Limit To All Plant Sequences

>Glyma06g44023.1   sequence type=CDS   gene model=Glyma06g44023   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAGGAAAAGAAAGATCCCTTGAAGAAACACCAACATGGGCTGTCTCAGTCTTTTGCTTCTTCTTTCTTATGATATCTTTGATCATTGAGGGAGGTCTCCACAAATTGGCTGAGATTTTCAGGAAAAGGAAAGAAAAATCCCTAGGGAAGGCTTTGACTAAAACCAAAACAGAAATGATGAAATTCGGTTTCATGTCCTTTATTCTCACAATATCGGAAGTGCCAATATCCAAAATCTGCATCAGCAAGGGAGTGGCAAATTCTTTTCTCCCATGTAAAGATGTTGTGGACTTCACAGGATCTGCTACTCGTACTTCAACCTCAGGATTGGACGTAGCACCTGCTACCAATGAATCCGCCATTGAAGTCAACTATTGTGAAGCAAAGGGCATGGTTAGTTTAATTTCAAGTGATGGAATCCTGCAGCTAAACATTTTCATCTCCTTTTTGGCCGTGTTTCACATTTTGTTCTGCACATTGACAATGTGCCTTGGAAAGGCAAAGATGAGAAGATGGAAGAGATGGGAGGATGAGACCCAAACACTTGAATATCAGATAGCTAATGATCCAAGAAGGTTCCAGTATACAGGTCAAACATTGATTGGGAAGCGTCATTTGAAATTCTGGAGCTATCATTCTCCTTTGCTTTGGATGGTTTGCTTTATTCGGCAGTTCTACGGATCAGTATCAAAAGATGATTACTTCACTCTACGAAATGGTTTCATTGCAGCTAATATTTCTTTAGGAAGCAATTTCAACTTCAAGAAATTTCTTTCCCGCACTTATGATGAAGATTTTGAGAAAGTTATGGGAATCAGGATTTGGATCTGGATTTTCTCCATACTTTTCATATTTTTTAGCGCGCACGAGTTCTATAATTACTATTGGCTTCCATTTATTCCACTTGTGGTTGCTTTACTTGCTGGGACAAAACTACAAGTAATAATAACAAAGATGTGTGTGGATAGTTGCAAGGAAAAGTCAGTGATCAAAGGAAGTCTACTTGTAACACCTAGTGATGCCCATTTCTGGTTTCATAGACCTGAATGGCTTCTCCATTTACTCAAGTTCATCCTTATCCAGAACTCCTTTCAACTTGCATTCTTCACCTGGACTTGGTATGAATTTGGTCCAAGGTCTTGCTTCAATCGAAAAAGAGAGGACATTGGCATAAGGATTGTCATGGGTGTAGCTGTGCAGCTCTTTTGTGGCTATGTGACATTGCCCCTTTATGCACTTGTTACTCAGATGGGTTCTAGCATGAGGAGAGAAATTTTCACTGAGAGGGTTTCTAGGGACCTAAAAAATTGGCACAAAAGAGCTAAACAATCTGTGTCCAAAAACAACTCAACTTCAAGCAAACACTCAGATACTTTGCATTCCAAAGAATGTGACAATTCAGTAAGAGGATCAGTGGATATTGTGCACACCTCAGATAATGTAGTGCTCACAAGCCCTCCTTCTCACATGATAAGTGGAGAGGAGGAAAAGAGCATTGCACCAACCAATGAACAAGAGATATCAAGTAACTCCACTTCAGAAATAATCAAAACTACTCAGGAAGAGAATCCCAAGATCATCACCAGAGGAACCTATGACGGTGAGATCTCATTTGGAAGCAGCTGGAAGAATGTGGGAAGTAGCAGGGGCATTGGAGAAATTGGTTCAATAATTGAAGAAGATGATGCTGAAAAATTGCCTGAGTTGATTCCATAA

>Glyma06g44023.2   sequence type=CDS   gene model=Glyma06g44023   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAGGAAAAGAAAGATCCCTTGAAGAAACACCAACATGGGCTGTCTCAGTCTTTTGCTTCTTCTTTCTTATGATATCTTTGATCATTGAGGGAGGTCTCCACAAATTGGCTGAGATTTTCAGGAAAAGGAAAGAAAAATCCCTAGGGAAGGCTTTGACTAAAACCAAAACAGTGCCAATATCCAAAATCTGCATCAGCAAGGGAGTGGCAAATTCTTTTCTCCCATGTAAAGATGTTGTGGACTTCACAGGATCTGCTACTCGTACTTCAACCTCAGGATTGGACGTAGCACCTGCTACCAATGAATCCGCCATTGAAGTCAACTATTGTGAAGCAAAGGGCATGGTTAGTTTAATTTCAAGTGATGGAATCCTGCAGCTAAACATTTTCATCTCCTTTTTGGCCGTGTTTCACATTTTGTTCTGCACATTGACAATGTGCCTTGGAAAGGCAAAGATGAGAAGATGGAAGAGATGGGAGGATGAGACCCAAACACTTGAATATCAGATAGCTAATGATCCAAGAAGGTTCCAGTATACAGGTCAAACATTGATTGGGAAGCGTCATTTGAAATTCTGGAGCTATCATTCTCCTTTGCTTTGGATGGTTTGCTTTATTCGGCAGTTCTACGGATCAGTATCAAAAGATGATTACTTCACTCTACGAAATGGTTTCATTGCAGCTAATATTTCTTTAGGAAGCAATTTCAACTTCAAGAAATTTCTTTCCCGCACTTATGATGAAGATTTTGAGAAAGTTATGGGAATCAGGATTTGGATCTGGATTTTCTCCATACTTTTCATATTTTTTAGCGCGCACGAGTTCTATAATTACTATTGGCTTCCATTTATTCCACTTGTGGTTGCTTTACTTGCTGGGACAAAACTACAAGTAATAATAACAAAGATGTGTGTGGATAGTTGCAAGGAAAAGTCAGTGATCAAAGGAAGTCTACTTGTAACACCTAGTGATGCCCATTTCTGGTTTCATAGACCTGAATGGCTTCTCCATTTACTCAAGTTCATCCTTATCCAGAACTCCTTTCAACTTGCATTCTTCACCTGGACTTGGTATGAATTTGGTCCAAGGTCTTGCTTCAATCGAAAAAGAGAGGACATTGGCATAAGGATTGTCATGGGTGTAGCTGTGCAGCTCTTTTGTGGCTATGTGACATTGCCCCTTTATGCACTTGTTACTCAGATGGGTTCTAGCATGAGGAGAGAAATTTTCACTGAGAGGGTTTCTAGGGACCTAAAAAATTGGCACAAAAGAGCTAAACAATCTGTGTCCAAAAACAACTCAACTTCAAGCAAACACTCAGATACTTTGCATTCCAAAGAATGTGACAATTCAGTAAGAGGATCAGTGGATATTGTGCACACCTCAGATAATGTAGTGCTCACAAGCCCTCCTTCTCACATGATAAGTGGAGAGGAGGAAAAGAGCATTGCACCAACCAATGAACAAGAGATATCAAGTAACTCCACTTCAGAAATAATCAAAACTACTCAGGAAGAGAATCCCAAGATCATCACCAGAGGAACCTATGACGGTGAGATCTCATTTGGAAGCAGCTGGAAGAATGTGGGAAGTAGCAGGGGCATTGGAGAAATTGGTTCAATAATTGAAGAAGATGATGCTGAAAAATTGCCTGAGTTGATTCCATAA

Predicted protein sequences of Glyma06g44023

Limit To All Plant Sequences

>Glyma06g44023.1   sequence type=predicted peptide   gene model=Glyma06g44023   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIGKERSLEETPTWAVSVFCFFFLMISLIIEGGLHKLAEIFRKRKEKSLGKALTKTKTEMMKFGFMSFILTISEVPISKICISKGVANSFLPCKDVVDFTGSATRTSTSGLDVAPATNESAIEVNYCEAKGMVSLISSDGILQLNIFISFLAVFHILFCTLTMCLGKAKMRRWKRWEDETQTLEYQIANDPRRFQYTGQTLIGKRHLKFWSYHSPLLWMVCFIRQFYGSVSKDDYFTLRNGFIAANISLGSNFNFKKFLSRTYDEDFEKVMGIRIWIWIFSILFIFFSAHEFYNYYWLPFIPLVVALLAGTKLQVIITKMCVDSCKEKSVIKGSLLVTPSDAHFWFHRPEWLLHLLKFILIQNSFQLAFFTWTWYEFGPRSCFNRKREDIGIRIVMGVAVQLFCGYVTLPLYALVTQMGSSMRREIFTERVSRDLKNWHKRAKQSVSKNNSTSSKHSDTLHSKECDNSVRGSVDIVHTSDNVVLTSPPSHMISGEEEKSIAPTNEQEISSNSTSEIIKTTQEENPKIITRGTYDGEISFGSSWKNVGSSRGIGEIGSIIEEDDAEKLPELIP*

>Glyma06g44023.2   sequence type=predicted peptide   gene model=Glyma06g44023   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIGKERSLEETPTWAVSVFCFFFLMISLIIEGGLHKLAEIFRKRKEKSLGKALTKTKTVPISKICISKGVANSFLPCKDVVDFTGSATRTSTSGLDVAPATNESAIEVNYCEAKGMVSLISSDGILQLNIFISFLAVFHILFCTLTMCLGKAKMRRWKRWEDETQTLEYQIANDPRRFQYTGQTLIGKRHLKFWSYHSPLLWMVCFIRQFYGSVSKDDYFTLRNGFIAANISLGSNFNFKKFLSRTYDEDFEKVMGIRIWIWIFSILFIFFSAHEFYNYYWLPFIPLVVALLAGTKLQVIITKMCVDSCKEKSVIKGSLLVTPSDAHFWFHRPEWLLHLLKFILIQNSFQLAFFTWTWYEFGPRSCFNRKREDIGIRIVMGVAVQLFCGYVTLPLYALVTQMGSSMRREIFTERVSRDLKNWHKRAKQSVSKNNSTSSKHSDTLHSKECDNSVRGSVDIVHTSDNVVLTSPPSHMISGEEEKSIAPTNEQEISSNSTSEIIKTTQEENPKIITRGTYDGEISFGSSWKNVGSSRGIGEIGSIIEEDDAEKLPELIP*

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