Glyma06g43900 - SoyBase

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Report for Sequence Feature Glyma06g43900

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46895882
stop:	46898504
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g43900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28510	AT	Annotation by Michelle Graham. TAIR10: Optic atrophy 3 protein (OPA3) \| chr1:10024036-10025939 FORWARD LENGTH=171	SoyBase	E_val: 1.00E-63	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3335	KOG	Predicted coiled-coil protein	JGI		ISS
PTHR12499	Panther	OPTIC ATROPHY 3 PROTEIN (OPA3)	JGI		ISS
PF07047	PFAM	Optic atrophy 3 protein (OPA3)	JGI		ISS
UniRef100_B9SGN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Optic atrophy 3 protein, putative n=1 Tax=Ricinus communis RepID=B9SGN9_RICCO	SoyBase	E_val: 3.00E-79	ISS
UniRef100_I1KEV8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEV8_SOYBN	SoyBase	E_val: 1.00E-109	ISS

Expression Patterns of Glyma06g43900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g43900

Paralog	Evidence	Comments
Glyma12g14007	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g43900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g285900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g43900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g43900

Limit To All Plant Sequences

>Glyma06g43900.2   sequence type=transcript   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTCGTTTTACTTTTCTGCTACTCTGATCATTTTCTTGTTGAGGAAGAAAGATGCTGATGAAATTCAAATACCCTCGTCGATCACACGCACCCAAGACCAAGAACTCAAGAAGGGTACCACATTCGCTTTATCACTATTAACTTCATAACTTAGTTTCTCTTCTAGTCCAGAAGTACAAGTAAGTGATGGTGGTGTTTCCGGTGGTGAAGCTAGCAACACTCGCTCTGAGAACCGCGTGCAAACCAATCGCCAACAGGCTCAAGAAGGAGGCCGGTTACCACCCCAAGTTCCGAAATTTCATCATCAGCATTGCCCAGGCCAATCATAGATTGACGACGAGAGTGCAGAGACGAATTTACGGTCATGCCACTGATGTTGCAATCCACCCTCTGAACGAGGAGAAGGCTGTGCAAGCTGCTGCTGATCTGCTTGGAGAACTCTTTGTCTTCTCGACAAATGTGGCCGATGCAATTCTAATCGCAGTCGCGGACATTTTAAAAACTTTGATGTTGCAGCCCAAAACAAGGTTGCAGGAGCTGCCATCATCTTTGAGGTGCAAAGAAGTTCAAGATCAGAAGCAAGAAAAGAAGAATTACGTAGACAGGAGATACAGGAAATAAAGACTAAGAATGAAGAATTGGCTAGAGAAATTGAACTTCTTGCACAAAAGCTTGAAGAGCTGGAACAACTTTCCAGGGGACGAGGACTACTTGGCACTCTTAACTTCAGACACACTCGTGTCTCTGAAGATAGAAAATCCAATTGATTGTTGCAATTGTTAAGCATTGCACACAGATTTTGATTAACAAGCAATACCTCTTGGTGTGGCAAGAAGCATGATATTGACAATGTGCAGATGGGTTACTGTATATTATATATGGAGGTACAATCAGAGCTAAAACCAAATTTTAGGTGTGGTGAGGGGCTTTGAGGATTTTTTTTTTGAGAGGGGCTTTGAGGATTAATCTTGTTCATACGAAATAAAACAAAATTGTACAACACATTTATGAATGCGTTCTTTTTGAAAATTTCCTTTCCAGGGACAAATTCAGCCTGCTAACTACAGTTTTCTAGCCTTTTGGATAATCTACATTTGTTTCCTTCAAAATTT

>Glyma06g43900.3   sequence type=transcript   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGATGAAATTCAAATACCCTCGTCGATCACACGCACCCAAGACCAAGAACTCAAGAAGGCTAGCAACACTCGCTCTGAGAACCGCGTGCAAACCAATCGCCAACAGGCTCAAGAAGGAGGCCGGTTACCACCCCAAGTTCCGAAATTTCATCATCAGCATTGCCCAGGCCAATCATAGATTGACGACGAGAGTGCAGAGACGAATTTACGGTCATGCCACTGATGTTGCAATCCACCCTCTGAACGAGGAGAAGGCTGTGCAAGCTGCTGCTGATCTGCTTGGAGAACTCTTTGTCTTCTCGGTTGCAGGAGCTGCCATCATCTTTGAGGTGCAAAGAAGTTCAAGATCAGAAGCAAGAAAAGAAGAATTACGTAGACAGGAGATACAGGAAATAAAGACTAAGAATGAAGAATTGGCTAGAGAAATTGAACTTCTTGCACAAAAGCTTGAAGAGCTGGAACAACTTTCCAGGGGACGAGGACTACTTGGCACTCTTAACTTCAGACACACTCGTGTCTCTGAAGATAGAAAATCCAATTGATTGTTGCAATTGTTAAGCATTGCACACAGATTTTGATTAACAAGCAATACCTCTTGGTGTGGCAAGAAGCATGATATTGACAATGTGCAGATGGGTTACTGTATATTATATATGGAGGTACAATCAGAGCTAAAACCAAATTTTAGGTGTGGTGAGGGGCTTTGAGGATTTTTTTTTTGAGAGGGGCTTTGAGGATTAATCTTGTTCATACGAAATAAAACAAAATTGTACAACACATTTATGAATGCGTTCTTTTTGAAAATTTCCTTTCCAGGGACAAATTCAGCCTGCTAACTACAGTTTTCTAGCCTTTTGGATAATCTACATTTGTTTCCTTCAAAATTT

>Glyma06g43900.4   sequence type=transcript   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGATGAAATTCAAATACCCTCGTCGATCACACGCACCCAAGACCAAGAACTCAAGAAGGCTAGCAACACTCGCTCTGAGAACCGCGTGCAAACCAATCGCCAACAGGCTCAAGAAGGAGGCCGGTTACCACCCCAAGTTCCGAAATTTCATCATCAGCATTGCCCAGGCCAATCATAGATTGACGACGAGAGTGCAGAGACGAATTTACGGTCATGCCACTGATGTTGCAATCCACCCTCTGAACGAGGAGAAGGCTGTGCAAGCTGCTGCTGATCTGCTTGGAGAACTCTTTGTCTTCTCGACAAATGTGGCCGATGCAATTCTAATCGCAGTCGCGGACATTTTAAAAACTTTGATGTTGCAGCCCAAAACAAGGTTGCAGGAGCTGCCATCATCTTTGAGGTGCAAAGAAGTTCAAGATCAGAAGCAAGAAAAGAAGAATTACGTAGACAGGAGATACAGGAAATAAAGACTAAGAATGAAGAATTGGCTAGAGAAATTGAACTTCTTGCACAAAAGCTTGAAGAGCTGGAACAACTTTCCAGGGGACGAGGACTACTTGGCACTCTTAACTTCAGACACACTCGTGTCTCTGAAGATAGAAAATCCAATTGATTGTTGCAATTGTTAAGCATTGCACACAGATTTTGATTAACAAGCAATACCTCTTGGTGTGGCAAGAAGCATGATATTGACAATGTGCAGATGGGTTACTGTATATTATATATGGAGGTACAATCAGAGCTAAAACCAAATTTTAGGTGTGGTGAGGGGCTTTGAGGATTTTTTTTTTGAGAGGGGCTTTGAGGATTAATCTTGTTCATACGAAATAAAACAAAATTGTACAACACATTTATGAATGCGTTCTTTTTGAAAATTTCCTTTCCAGGGACAAATTCAGCCTGCTAACTACAGTTTTCTAGCCTTTTGGATAATCTACATTTGTTTCCTTCAAAATTT

Coding sequences of Glyma06g43900

Limit To All Plant Sequences

>Glyma06g43900.1   sequence type=CDS   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGTTTCCGGTGGTGAAGCTAGCAACACTCGCTCTGAGAACCGCGTGCAAACCAATCGCCAACAGGCTCAAGAAGGAGGCCGGTTACCACCCCAAGTTCCGAAATTTCATCATCAGCATTGCCCAGGCCAATCATAGATTGACGACGAGAGTGCAGAGACGAATTTACGGTCATGCCACTGATGTTGCAATCCACCCTCTGAACGAGGAGAAGGCTGTGCAAGCTGCTGCTGATCTGCTTGGAGAACTCTTTGTCTTCTCGGTTGCAGGAGCTGCCATCATCTTTGAGGTGCAAAGAAGTTCAAGATCAGAAGCAAGAAAAGAAGAATTACGTAGACAGGAGATACAGGAAATAAAGACTAAGAATGAAGAATTGGCTAGAGAAATTGAACTTCTTGCACAAAAGCTTGAAGAGCTGGAACAACTTTCCAGGGGACGAGGACTACTTGGCACTCTTAACTTCAGACACACTCGTGTCTCTGAAGATAGAAAATCCAATTGA

>Glyma06g43900.2   sequence type=CDS   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGTTTCCGGTGGTGAAGCTAGCAACACTCGCTCTGAGAACCGCGTGCAAACCAATCGCCAACAGGCTCAAGAAGGAGGCCGGTTACCACCCCAAGTTCCGAAATTTCATCATCAGCATTGCCCAGGCCAATCATAGATTGACGACGAGAGTGCAGAGACGAATTTACGGTCATGCCACTGATGTTGCAATCCACCCTCTGAACGAGGAGAAGGCTGTGCAAGCTGCTGCTGATCTGCTTGGAGAACTCTTTGTCTTCTCGACAAATGTGGCCGATGCAATTCTAATCGCAGTCGCGGACATTTTAAAAACTTTGATGTTGCAGCCCAAAACAAGGTTGCAGGAGCTGCCATCATCTTTGAGGTGCAAAGAAGTTCAAGATCAGAAGCAAGAAAAGAAGAATTACGTAGACAGGAGATACAGGAAATAA

>Glyma06g43900.3   sequence type=CDS   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTCAAATACCCTCGTCGATCACACGCACCCAAGACCAAGAACTCAAGAAGGCTAGCAACACTCGCTCTGAGAACCGCGTGCAAACCAATCGCCAACAGGCTCAAGAAGGAGGCCGGTTACCACCCCAAGTTCCGAAATTTCATCATCAGCATTGCCCAGGCCAATCATAGATTGACGACGAGAGTGCAGAGACGAATTTACGGTCATGCCACTGATGTTGCAATCCACCCTCTGAACGAGGAGAAGGCTGTGCAAGCTGCTGCTGATCTGCTTGGAGAACTCTTTGTCTTCTCGGTTGCAGGAGCTGCCATCATCTTTGAGGTGCAAAGAAGTTCAAGATCAGAAGCAAGAAAAGAAGAATTACGTAGACAGGAGATACAGGAAATAAAGACTAAGAATGAAGAATTGGCTAGAGAAATTGAACTTCTTGCACAAAAGCTTGAAGAGCTGGAACAACTTTCCAGGGGACGAGGACTACTTGGCACTCTTAACTTCAGACACACTCGTGTCTCTGAAGATAGAAAATCCAATTGA

>Glyma06g43900.4   sequence type=CDS   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTCAAATACCCTCGTCGATCACACGCACCCAAGACCAAGAACTCAAGAAGGCTAGCAACACTCGCTCTGAGAACCGCGTGCAAACCAATCGCCAACAGGCTCAAGAAGGAGGCCGGTTACCACCCCAAGTTCCGAAATTTCATCATCAGCATTGCCCAGGCCAATCATAGATTGACGACGAGAGTGCAGAGACGAATTTACGGTCATGCCACTGATGTTGCAATCCACCCTCTGAACGAGGAGAAGGCTGTGCAAGCTGCTGCTGATCTGCTTGGAGAACTCTTTGTCTTCTCGACAAATGTGGCCGATGCAATTCTAATCGCAGTCGCGGACATTTTAAAAACTTTGATGTTGCAGCCCAAAACAAGGTTGCAGGAGCTGCCATCATCTTTGAGGTGCAAAGAAGTTCAAGATCAGAAGCAAGAAAAGAAGAATTACGTAGACAGGAGATACAGGAAATAA

Predicted protein sequences of Glyma06g43900

Limit To All Plant Sequences

>Glyma06g43900.1   sequence type=predicted peptide   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVFPVVKLATLALRTACKPIANRLKKEAGYHPKFRNFIISIAQANHRLTTRVQRRIYGHATDVAIHPLNEEKAVQAAADLLGELFVFSVAGAAIIFEVQRSSRSEARKEELRRQEIQEIKTKNEELAREIELLAQKLEELEQLSRGRGLLGTLNFRHTRVSEDRKSN*

>Glyma06g43900.2   sequence type=predicted peptide   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVFPVVKLATLALRTACKPIANRLKKEAGYHPKFRNFIISIAQANHRLTTRVQRRIYGHATDVAIHPLNEEKAVQAAADLLGELFVFSTNVADAILIAVADILKTLMLQPKTRLQELPSSLRCKEVQDQKQEKKNYVDRRYRK*

>Glyma06g43900.3   sequence type=predicted peptide   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFKYPRRSHAPKTKNSRRLATLALRTACKPIANRLKKEAGYHPKFRNFIISIAQANHRLTTRVQRRIYGHATDVAIHPLNEEKAVQAAADLLGELFVFSVAGAAIIFEVQRSSRSEARKEELRRQEIQEIKTKNEELAREIELLAQKLEELEQLSRGRGLLGTLNFRHTRVSEDRKSN*

>Glyma06g43900.4   sequence type=predicted peptide   gene model=Glyma06g43900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFKYPRRSHAPKTKNSRRLATLALRTACKPIANRLKKEAGYHPKFRNFIISIAQANHRLTTRVQRRIYGHATDVAIHPLNEEKAVQAAADLLGELFVFSTNVADAILIAVADILKTLMLQPKTRLQELPSSLRCKEVQDQKQEKKNYVDRRYRK*

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