SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G28520 | AT | Annotation by Michelle Graham. TAIR10: vascular plant one zinc finger protein | chr1:10029713-10031479 FORWARD LENGTH=486 | SoyBase | E_val: 2.00E-148 | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048574 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0048578 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of long-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| UniRef100_D5MRQ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MdVOZ1 protein n=1 Tax=Malus x domestica RepID=D5MRQ4_MALDO | SoyBase | E_val: 8.00E-157 | ISS |
| UniRef100_I1KEV7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KEV7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma06g43890 not represented in the dataset |
Glyma06g43890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g14030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g285800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g43890.3 sequence type=transcript gene model=Glyma06g43890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGGAAAAGTGGAGAAGGGTATCAGAAGGCACACAACAAAAATTCTTGCGTCTAATTGAAGCCTTCAACGTGCACAAATACTAATAACTCGAAAAATAATAATAAAAATATGCAAAATTCAATTAGAGAGACGCACAATTGAGGGCTTCTCTGAGTCTCTCTCGTCTTGTGCTGATTCCAGCGGAGCCGTCACACTTCCCCTCTTCTACGTCGTCGTTTTGAACCCCATTGCTCCCTCTCTCCAATTCAAGGCCAAAGGAAGGTATGATGAGAGAAAGTTTCAAGGGCAAGGGTGGATCTTCTTCTCTTCAATCCATGAAGGAGAAGGAAAAACACCTGGTGGAGAAGATTCAAGGGATTTTCAACAGTCTTCAGTGTGCAAGAAAGGAGGGCAGGGGTAATGACATTGTGATATTTGAGGAGCAGATGCATCAGTTGCTCCGAGAGTGGAAGGCGGAACTGGAGTCTCCGGCCAACTCCTTAGCTGATGGAAGCTTTGGTTCATTTCCCAGCGAACTAGCCCAAATGTTGCTAGGAACTGAGGAGAAAGATGATGCTACTAGTCCATTGACAAAACCTGTGCCATTGAAGAATGAGATCCTTACAAATAACATTAGTGACATCAATTTTCAGTATTTTCAGGAGAAGCATTTTAATGATAACCAACCACTAGGTCATACTTTTGAAGGAAGTGCTTCAACTCTGTACAACAATGCTTATAATAGCTCATATATGACACAGTTAGATTATCACCCATTCACTTTAAATCAAGATATGGGTCACAACTCTAATTTGTTGGGTCAGTTTGATTTATATCATGACCTCAGGCACAACACGGAAATGAAGAACAACTCAGAATCAACTCAATTTAGTTTAGAAGGTTTTGATTGTAGCCAATTCTTTGAAGCTGATGACAATGTGCAGCATGGAGAGAATATTATACCTAACATTCTTCCAAATATCTGCCCCCCACCTTCTGCTTTCTTAGCCCCAAAATGTGCCCTATGGGACTGTTTCAGACCTGCTCAAGGGGTAGAATGGTGCCAGAACTACTGTAGTAGTTGTCATGAGCTGTTGGCAAATAACGAGGGTCTTCCTGGCATGACCCCAATTTTGCGACCTTGGGGAATTGGTGTAAAAGATGGTCCTTTGTTTGCTGCTGTTCTTGCTAAGACGCAGGGAAAGGAAGTGGGCATCCCTAGTTGTGAAGGTGCTGCTTCAACTAAATCCCCCTGGAATGCTCCAGAGTTCTTTGATCTTTCTTTTCTTGAGGGTGAAACTGTTAGGGAGTGGCTCTTCTTTGACAAGCCTAGAAGGGCATTTGAAAGTGGAAATAGAAAACAGAGATCACTTCCGGATTACAGTGGGCGTGGTTGGCATGAATCAAGGAAGCAGGTAATGAAGGAACATGGGGGACAAAAGAGGTCCTATTACATGGACCCCCAGCCTCTTAGTTATCTCGAGTGGCATTTGTACGAGTATGAGATCAACAACCAGGATGGTTGTGCATTATACAGACTAGAATTAAAGCTGGTGGACAAAAAGAAAAGTCCTAAAGGAAAAGTGACCAAGGAATCTCTTACTGATTTGCAGAACAAGATGGGACAGCTTACTGCTGCTGTTCCATCTACTGATGATGGACAACCAGTCAAGGGAAAAACAAAGGCCAAGTCTGAGAATGATGAATCTCCCAACAAGTAAATTAATACTCCGTTGTGCGATTTTACCATATTACTGACCAACATGTACATATTTGAAGATGGTTCACAGCTTGTGGAAATTTCTGACTTTCCTTGAACAAGGTAAAAAGGCTAATAAAATTTTGCTTGTGGTAGAAGGTGCTCATAGTCTTGTGCTTAATTCATCGATATTCTACTTTTCTGATGGATCAGTGGGAGTTTCCTTTGTTGGCTGCTTTGCTATCAACCAAATTTCTGACATATTCTTAAAATTTAGTAGTGTTTATTTGGTTGTACATGTTCTTTAAATGGTGGGAACAATTTTATTTATCTTGTATTACTTCTACAAGTGCTGCAAATTGAATGCAAAATAGAGTTTCTGTATAGATATACTATGCATGCACTTTCCCTTCTGTTGAATGAGACATCACTTCTCTTATTTTTCATGCATGTTTGGTTTTAAGTTTAAAATTTTCCAAACCATGGTTTGGTCAAAGGCTTGTCACTTGTGCATTTAACCTGCAACTCCTGTGGAATTACTATTTTGAAGGACAAAACGTGGTCATTAAGAGAACAATCTTCATATTTTATCTGTTTGTTTTGCC
>Glyma06g43890.2 sequence type=CDS gene model=Glyma06g43890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAGAGAAAGTTTCAAGGGCAAGGGTGGATCTTCTTCTCTTCAATCCATGAAGGAGAAGGAAAAACACCTGGTGGAGAAGATTCAAGGGATTTTCAACAGTCTTCAGTGTGCAAGAAAGGAGGGCAGGGGTAATGACATTGTGATATTTGAGGAGCAGATGCATCAGTTGCTCCGAGAGTGGAAGGCGGAACTGGAGTCTCCGGCCAACTCCTTAGCTGATGGAAGCTTTGGTTCATTTCCCAGCGAACTAGCCCAAATGTTGCTAGGAACTGAGGAGAAAGATGATGCTACTAGTCCATTGACAAAACCTGTGCCATTGAAGAATGAGATCCTTACAAATAACATTAGTGACATCAATTTTCAGTATTTTCAGGAGAAGCATTTTAATGATAACCAACCACTAGGTCATACTTTTGAAGGAAGTGCTTCAACTCTGTACAACAATGCTTATAATAGCTCATATATGACACAGTTAGATTATCACCCATTCACTTTAAATCAAGATATGGGTCACAACTCTAATTTGTTGGGTCAGTTTGATTTATATCATGACCTCAGGCACAACACGGAAATGAAGAACAACTCAGAATCAACTCAATTTAGTTTAGAAGGTTTTGATTGTAGCCAATTCTTTGAAGCTGATGACAATGTGCAGCATGGAGAGAATATTATACCTAACATTCTTCCAAATATCTGCCCCCCACCTTCTGCTTTCTTAGCCCCAAAATGTGCCCTATGGGACTGTTTCAGACCTGCTCAAGGGGTAGAATGGTGCCAGAACTACTGTAGTAGTTGTCATGAGCTGTTGGCAAATAACGAGGGTCTTCCTGGCATGACCCCAATTTTGCGACCTTGGGGAATTGGTGTAAAAGATGGTCCTTTGTTTGCTGCTGTTCTTGCTAAGACGCAGGGAAAGGAAGTGGGCATCCCTAGTTGTGAAGGTGCTGCTTCAACTAAATCCCCCTGGAATGCTCCAGAGTTCTTTGATCTTTCTTTTCTTGAGGGTGAAACTGTTAGGGAGTGGCTCTTCTTTGACAAGCCTAGAAGGGCATTTGAAAGTGGAAATAGAAAACAGAGATCACTTCCGGATTACAGTGGGCGTGGTTGGCATGAATCAAGGAAGCAGGTAATGAAGGAACATGGGGGACAAAAGAGGTCCTATTACATGGACCCCCAGCCTCTTAGTTATCTCGAGTGGCATTTGTACGAGTATGAGATCAACAACCAGGATGGTTGTGCATTATACAGACTAGAATTAAAGCTGGTGGACAAAAAGAAAAGTCCTAAAGGAAAAGTGACCAAGGAATCTCTTACTGATTTGCAGAACAAGATGGGACAGCTTACTGCTGCTGTTCCATCTACTGATGATGGACAACCAGTCAAGGGAAAAACAAAGGCCAAGTCTGAGAATGATGAATCTCCCAACAAGTAA >Glyma06g43890.3 sequence type=CDS gene model=Glyma06g43890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAGAGAAAGTTTCAAGGGCAAGGGTGGATCTTCTTCTCTTCAATCCATGAAGGAGAAGGAAAAACACCTGGTGGAGAAGATTCAAGGGATTTTCAACAGTCTTCAGTGTGCAAGAAAGGAGGGCAGGGGTAATGACATTGTGATATTTGAGGAGCAGATGCATCAGTTGCTCCGAGAGTGGAAGGCGGAACTGGAGTCTCCGGCCAACTCCTTAGCTGATGGAAGCTTTGGTTCATTTCCCAGCGAACTAGCCCAAATGTTGCTAGGAACTGAGGAGAAAGATGATGCTACTAGTCCATTGACAAAACCTGTGCCATTGAAGAATGAGATCCTTACAAATAACATTAGTGACATCAATTTTCAGTATTTTCAGGAGAAGCATTTTAATGATAACCAACCACTAGGTCATACTTTTGAAGGAAGTGCTTCAACTCTGTACAACAATGCTTATAATAGCTCATATATGACACAGTTAGATTATCACCCATTCACTTTAAATCAAGATATGGGTCACAACTCTAATTTGTTGGGTCAGTTTGATTTATATCATGACCTCAGGCACAACACGGAAATGAAGAACAACTCAGAATCAACTCAATTTAGTTTAGAAGGTTTTGATTGTAGCCAATTCTTTGAAGCTGATGACAATGTGCAGCATGGAGAGAATATTATACCTAACATTCTTCCAAATATCTGCCCCCCACCTTCTGCTTTCTTAGCCCCAAAATGTGCCCTATGGGACTGTTTCAGACCTGCTCAAGGGGTAGAATGGTGCCAGAACTACTGTAGTAGTTGTCATGAGCTGTTGGCAAATAACGAGGGTCTTCCTGGCATGACCCCAATTTTGCGACCTTGGGGAATTGGTGTAAAAGATGGTCCTTTGTTTGCTGCTGTTCTTGCTAAGACGCAGGGAAAGGAAGTGGGCATCCCTAGTTGTGAAGGTGCTGCTTCAACTAAATCCCCCTGGAATGCTCCAGAGTTCTTTGATCTTTCTTTTCTTGAGGGTGAAACTGTTAGGGAGTGGCTCTTCTTTGACAAGCCTAGAAGGGCATTTGAAAGTGGAAATAGAAAACAGAGATCACTTCCGGATTACAGTGGGCGTGGTTGGCATGAATCAAGGAAGCAGGTAATGAAGGAACATGGGGGACAAAAGAGGTCCTATTACATGGACCCCCAGCCTCTTAGTTATCTCGAGTGGCATTTGTACGAGTATGAGATCAACAACCAGGATGGTTGTGCATTATACAGACTAGAATTAAAGCTGGTGGACAAAAAGAAAAGTCCTAAAGGAAAAGTGACCAAGGAATCTCTTACTGATTTGCAGAACAAGATGGGACAGCTTACTGCTGCTGTTCCATCTACTGATGATGGACAACCAGTCAAGGGAAAAACAAAGGCCAAGTCTGAGAATGATGAATCTCCCAACAAGTAA
>Glyma06g43890.2 sequence type=predicted peptide gene model=Glyma06g43890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMRESFKGKGGSSSLQSMKEKEKHLVEKIQGIFNSLQCARKEGRGNDIVIFEEQMHQLLREWKAELESPANSLADGSFGSFPSELAQMLLGTEEKDDATSPLTKPVPLKNEILTNNISDINFQYFQEKHFNDNQPLGHTFEGSASTLYNNAYNSSYMTQLDYHPFTLNQDMGHNSNLLGQFDLYHDLRHNTEMKNNSESTQFSLEGFDCSQFFEADDNVQHGENIIPNILPNICPPPSAFLAPKCALWDCFRPAQGVEWCQNYCSSCHELLANNEGLPGMTPILRPWGIGVKDGPLFAAVLAKTQGKEVGIPSCEGAASTKSPWNAPEFFDLSFLEGETVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEINNQDGCALYRLELKLVDKKKSPKGKVTKESLTDLQNKMGQLTAAVPSTDDGQPVKGKTKAKSENDESPNK* >Glyma06g43890.3 sequence type=predicted peptide gene model=Glyma06g43890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMRESFKGKGGSSSLQSMKEKEKHLVEKIQGIFNSLQCARKEGRGNDIVIFEEQMHQLLREWKAELESPANSLADGSFGSFPSELAQMLLGTEEKDDATSPLTKPVPLKNEILTNNISDINFQYFQEKHFNDNQPLGHTFEGSASTLYNNAYNSSYMTQLDYHPFTLNQDMGHNSNLLGQFDLYHDLRHNTEMKNNSESTQFSLEGFDCSQFFEADDNVQHGENIIPNILPNICPPPSAFLAPKCALWDCFRPAQGVEWCQNYCSSCHELLANNEGLPGMTPILRPWGIGVKDGPLFAAVLAKTQGKEVGIPSCEGAASTKSPWNAPEFFDLSFLEGETVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEINNQDGCALYRLELKLVDKKKSPKGKVTKESLTDLQNKMGQLTAAVPSTDDGQPVKGKTKAKSENDESPNK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
