SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06290 | AT | Annotation by Michelle Graham. TAIR10: acyl-CoA oxidase 3 | chr1:1922423-1926002 FORWARD LENGTH=675 | SoyBase | E_val: 0 | ISS |
| GO:0006631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0051791 | GO-bp | Annotation by Michelle Graham. GO Biological Process: medium-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0003995 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-CoA dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0003997 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-CoA oxidase activity | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG0135 | KOG | Pristanoyl-CoA/acyl-CoA oxidase | JGI | ISS | |
| PTHR10909 | Panther | ELECTRON TRANSPORT OXIDOREDUCTASE | JGI | ISS | |
| PTHR10909:SF94 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00441 | PFAM | Acyl-CoA dehydrogenase, C-terminal domain | JGI | ISS | |
| PF01756 | PFAM | Acyl-CoA oxidase | JGI | ISS | |
| PF02770 | PFAM | Acyl-CoA dehydrogenase, middle domain | JGI | ISS | |
| UniRef100_I1KEV4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1KEV4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KEV4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1KEV4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma06g43840 not represented in the dataset |
Glyma06g43840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g14060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g285400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g43840.1 sequence type=CDS gene model=Glyma06g43840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACAACGACCGCGTCTCCCGCCGCACCGAGGTCCTCACCAACCACCTCCTCCGCCGCACACCCCCACCCTCCGCCCTTCTCCACCCCCACCCCTGCCTTAGCTACTCCCCCCCGGAGCTCTCCAACACCATCTCCTTCGACACGCGTGAGATGCGAAAACTAATGGATTGCCACAATCTGGAGGAGCGCGACTGGATCTTCTCTCTCATCCTCCAGAGCCCCCTCTTCAACCCCCGCCACCGCGCCGGAAGGGTGTTCGTCTCCCCCGACTACAACCAGCCCATGGAACACCAGCGCCAGGCCACCATGAAGCGCATCGGTTATCTCCTCCAAAAAGGGGTCTTCCGAGGATGGCTCACGGGAAATGGCCCCGAACAAGAGCTCAGGAAGCTCGCGCTGCATGAGGTCATTGGGATGTATGATCATTCTCTCGCGGTTAAGCTTGGCGTTCACTTCTTCTTGTGGGGTGGAGCCGTAAAGTTTCTGGGAACCAAGCGCCATCATGACAAGTGGTTGAATTCTACTGAAAACTATGATATCAAGGGTTGTTTTGCTATGTCTGAGTTAGGCCATGGAAGTAATGTTCGAGGAATTGAAACAGTCACTACTTATGATTCAAACACCGGAGAATTTGTCATCAATACCCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCGGCAAATCATGCAACCCACACTATAGTCTTTTCACAGCTCTATATAAATGGAAGCAATCAAGGGGTGCATGCATTTATTGCCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGGTTTGATAATGTGAGGATACCCAGAGAGAATTTGTTGAATTCTGTGGCTGATGTTTCACCAAGTGGTGAATATTTGAGTGCAATAAAGAATGCAGATCAGAGGTTTGCTGCGTTCTTAGCCCCTTTGACTTCTGGTCGTGTTACTATTGCTGTTAGTGCTGTTTACATATCCAAGATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCCATTACACCAAACGGGCCTGAAGTCTTCCTGCTTGATTACCCTAGTCATCAACGGCGTCTGTTACCTTTACTTGCAAAGGTATATGCAATGAGTTTTGCCGCAAATGAGCTCAAAATTATGTATGTCAACAGAACGCCCAAGTCAAACAAAGCAATTCATATTGTTTCTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGAACTCTCCAGGAATGCCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGATTAGCAAGGCACTCTTTGCAGAATATATAGCATGTCAGAAGAAAAACAAACCATTCAGTGGTTTGGGATTAGAACACATGAACAAACCTCTGCCTGTTATCCCATCTCAGCTAACAAGTTCCACTGTTAGGAGCAGTGAATTTCAGATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAGACGTTTTGCTGAAGAGGTCTCAGAATATCAATCTCGTGGAGAAAGCAAAGAGTCTGCCTTCATTCTAAGTTATCAGCTCGCAGGAGACTTGGGCAGAGCTTTCTCAGAACGAGCAATATTAAAAACGTTCATGGAGGCCGAGTCAACTTTACCTGCTGGTACATTGAAGAATGTCTTGGGTCTATTGAGATCGTTGTATGCTGTGATATGTGTGGATGAAGATGCTGCTTTTCTTCGATATGGATACTTGTCAACAGAGAATGCTTCTGCAGTGAGGAAAGAAGTGCCAAAACTCTGTGCTGAAATTCGACCTCATGCACTTGCCTTGGTCAGTTCCTTTGGTATTCCTGATGCATTTTTGAGTCCTATCGCATATAACTGGGTTGATTCAAATTCATGGTCTTCTCAACTTTAG
>Glyma06g43840.1 sequence type=predicted peptide gene model=Glyma06g43840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDNDRVSRRTEVLTNHLLRRTPPPSALLHPHPCLSYSPPELSNTISFDTREMRKLMDCHNLEERDWIFSLILQSPLFNPRHRAGRVFVSPDYNQPMEHQRQATMKRIGYLLQKGVFRGWLTGNGPEQELRKLALHEVIGMYDHSLAVKLGVHFFLWGGAVKFLGTKRHHDKWLNSTENYDIKGCFAMSELGHGSNVRGIETVTTYDSNTGEFVINTPCESGQKYWIGGAANHATHTIVFSQLYINGSNQGVHAFIAQIRDSDGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPSGEYLSAIKNADQRFAAFLAPLTSGRVTIAVSAVYISKISLAIAIRYALTRQAFSITPNGPEVFLLDYPSHQRRLLPLLAKVYAMSFAANELKIMYVNRTPKSNKAIHIVSSAYKATLTWNNMRTLQECREACGGQGVKSENRVGNFMGEFDVHSTFEGDNNVLMQQISKALFAEYIACQKKNKPFSGLGLEHMNKPLPVIPSQLTSSTVRSSEFQIDLFHLRERDLLRRFAEEVSEYQSRGESKESAFILSYQLAGDLGRAFSERAILKTFMEAESTLPAGTLKNVLGLLRSLYAVICVDEDAAFLRYGYLSTENASAVRKEVPKLCAEIRPHALALVSSFGIPDAFLSPIAYNWVDSNSWSSQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
