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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G31060 | AT | Annotation by Michelle Graham. TAIR10: elongation factor family protein | chr2:13213496-13218544 REVERSE LENGTH=667 | SoyBase | E_val: 0 | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0462 | KOG | Elongation factor-type GTP-binding protein | JGI | ISS | |
| PTHR23115 | Panther | TRANSLATION FACTOR | JGI | ISS | |
| PTHR23115:SF14 | Panther | GTP-BINDING PROTEIN TYPA/BIPA | JGI | ISS | |
| PF00009 | PFAM | Elongation factor Tu GTP binding domain | JGI | ISS | |
| PF00679 | PFAM | Elongation factor G C-terminus | JGI | ISS | |
| PF03144 | PFAM | Elongation factor Tu domain 2 | JGI | ISS | |
| UniRef100_B9SGN3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein typa/bipa, putative n=1 Tax=Ricinus communis RepID=B9SGN3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KEV1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEV1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g43820 not represented in the dataset |
Glyma06g43820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g14080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g285200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g43820.2 sequence type=transcript gene model=Glyma06g43820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGTACTTTCTAAAACCCTCCAAGTTCATGTGTTGAAATGGGAAGAAAGCTAAACCCTTTCCATGGTATTGCTGCGCCATCTGCATAGCTAGCTCAGAACCAAACCATGGTGGGTCCCATTATTCGTTCTCTCTGGTCCTCCACCAGAAAATCCTTCTCTTCTTCTTCTTCTTCTTTTTCTCCCTCTCCTCCTTTATCCCACTCGCGCTTCTTCTCACGCGCCTTCGCCGCCGCTCCCGCCACTGCCCCTGCCGCAGCAACCACCGCCTCCTCCCTCGACCCCAGCCGCCTCCGCAACCTGGCCGTGATCGCTCATGTCGACCACGGCAAGACCACCCTCATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGGTCACGTCTGTTTCGTGGAAGGAGAATGAGCTGAACATGGTTGATACTCCCGGGCACGCCGATTTTGGTGGTGAGGTTGAGCGTGTTGTTGGTATGGTTGAGGGAGCGATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACGAAATTTGTTCTTGCAAAGGCCTTGAAGTACGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTGCAGTTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAGAGGAGCAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCGTCTACTACATTTACCAAGGATCCTCCTGCTGATGCCAGAAATATGTCACAGTTGCTTGATGCCGTTGTAAGACATGTTCCACCACCAAATGCAAACATTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAAAAAGATTTCTATCTTGGGCGAATTTTGACTGGACGCATATTCTCTGGGGTTGTTCGTGTTGGTGACAAGGTTCATGGATTACGTAATAAAGATTCTGGTGCTGAAAAAATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATTTCAATTGCTGGCCTGTCAAGTCCAGCAATAGGCCATACAGTGGCAACTGTGGAGATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCATTTGACTGGGGGGAGAATTGGTGACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATGTATAAAACTGAAAGCGGTCAGAAGCTTGAGCCTGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGTTTGATAATGGAGGCCTTGTCTCATAGACGAGCAGAGGTTACGGACATGGGTCCTGTTTCAGGAACTGTTGGTCGAACTAGATTGTGTTTGACTTGTCCATCAAGGCAAAATATACATCTATTTAATGGGAATACTGTAGATGCATGGTTTTGAAGAAATCACATTCGTAGGTTTTTTGTTTCTTATTATCCTTTGCCCGTTTT
>Glyma06g43820.1 sequence type=CDS gene model=Glyma06g43820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGGTCCCATTATTCGTTCTCTCTGGTCCTCCACCAGAAAATCCTTCTCTTCTTCTTCTTCTTCTTTTTCTCCCTCTCCTCCTTTATCCCACTCGCGCTTCTTCTCACGCGCCTTCGCCGCCGCTCCCGCCACTGCCCCTGCCGCAGCAACCACCGCCTCCTCCCTCGACCCCAGCCGCCTCCGCAACCTGGCCGTGATCGCTCATGTCGACCACGGCAAGACCACCCTCATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGGTCACGTCTGTTTCGTGGAAGGAGAATGAGCTGAACATGGTTGATACTCCCGGGCACGCCGATTTTGGTGGTGAGGTTGAGCGTGTTGTTGGTATGGTTGAGGGAGCGATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACGAAATTTGTTCTTGCAAAGGCCTTGAAGTACGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTGCAGTTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAGAGGAGCAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCGTCTACTACATTTACCAAGGATCCTCCTGCTGATGCCAGAAATATGTCACAGTTGCTTGATGCCGTTGTAAGACATGTTCCACCACCAAATGCAAACATTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAAAAAGATTTCTATCTTGGGCGAATTTTGACTGGACGCATATTCTCTGGGGTTGTTCGTGTTGGTGACAAGGTTCATGGATTACGTAATAAAGATTCTGGTGCTGAAAAAATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATTTCAATTGCTGGCCTGTCAAGTCCAGCAATAGGCCATACAGTGGCAACTGTGGAGATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCATTTGACTGGGGGGAGAATTGGTGACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATGTATAAAACTGAAAGCGGTCAGAAGCTTGAGCCTGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGTTTGATAATGGAGGCCTTGTCTCATAGACGAGCAGAGGTTACGGACATGGGTCCTGTTTCAGGAACTGTTGGTCGAACTAGATTGTGTTTGACTTGTCCATCAAGGGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGCATATGAAAAATTTCGAGGCCCGCTTGGCAATGTCAGGAAAGGAGTACTGGTTTCAATGGGTTTTGGTACAATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGAGGGACTCTTTTTGTAACTCCTGGAATGGAGGCGTATGATGGAATGATTGTTGGAGAACATTCACGCGATACAGATCTTGATGTCAATCCTGTAAGGGCTAAAGAACTTACAAATATCCGTGCTGCTACCAAAGATGATAATGTGAAGCTGACTCCCCCTCGCCTTATGACACTTGAAGAAGCTATAGGGTATGTAGCTTCCGATGAACTTATTGAGGTTACACCAAAATCCATCCGTTTGAGGAAGAAATACCTTGATGTTAACAAGCGTAAAGCCATGAGTAAAAAGCCAAAGGAATGA >Glyma06g43820.2 sequence type=CDS gene model=Glyma06g43820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGGTCCCATTATTCGTTCTCTCTGGTCCTCCACCAGAAAATCCTTCTCTTCTTCTTCTTCTTCTTTTTCTCCCTCTCCTCCTTTATCCCACTCGCGCTTCTTCTCACGCGCCTTCGCCGCCGCTCCCGCCACTGCCCCTGCCGCAGCAACCACCGCCTCCTCCCTCGACCCCAGCCGCCTCCGCAACCTGGCCGTGATCGCTCATGTCGACCACGGCAAGACCACCCTCATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGGTCACGTCTGTTTCGTGGAAGGAGAATGAGCTGAACATGGTTGATACTCCCGGGCACGCCGATTTTGGTGGTGAGGTTGAGCGTGTTGTTGGTATGGTTGAGGGAGCGATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACGAAATTTGTTCTTGCAAAGGCCTTGAAGTACGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTGCAGTTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAGAGGAGCAACTAGACTTTCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCGTCTACTACATTTACCAAGGATCCTCCTGCTGATGCCAGAAATATGTCACAGTTGCTTGATGCCGTTGTAAGACATGTTCCACCACCAAATGCAAACATTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAAAAAGATTTCTATCTTGGGCGAATTTTGACTGGACGCATATTCTCTGGGGTTGTTCGTGTTGGTGACAAGGTTCATGGATTACGTAATAAAGATTCTGGTGCTGAAAAAATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATTTCAATTGCTGGCCTGTCAAGTCCAGCAATAGGCCATACAGTGGCAACTGTGGAGATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCATTTGACTGGGGGGAGAATTGGTGACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATGTATAAAACTGAAAGCGGTCAGAAGCTTGAGCCTGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGTTTGATAATGGAGGCCTTGTCTCATAGACGAGCAGAGGTTACGGACATGGGTCCTGTTTCAGGAACTGTTGGTCGAACTAGATTGTGTTTGACTTGTCCATCAAGGCAAAATATACATCTATTTAATGGGAATACTGTAGATGCATGGTTTTGA
>Glyma06g43820.1 sequence type=predicted peptide gene model=Glyma06g43820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGPIIRSLWSSTRKSFSSSSSSFSPSPPLSHSRFFSRAFAAAPATAPAAATTASSLDPSRLRNLAVIAHVDHGKTTLMDRLLRQCGADLPHERAMDSISLERERGITISSKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPADARNMSQLLDAVVRHVPPPNANIDAPFQMLVSMMEKDFYLGRILTGRIFSGVVRVGDKVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISIAGLSSPAIGHTVATVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTESGQKLEPVEEVTIEVNDEHVGLIMEALSHRRAEVTDMGPVSGTVGRTRLCLTCPSRGLVGYRSVFSSDTRGTGFMHRAFHAYEKFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGTLFVTPGMEAYDGMIVGEHSRDTDLDVNPVRAKELTNIRAATKDDNVKLTPPRLMTLEEAIGYVASDELIEVTPKSIRLRKKYLDVNKRKAMSKKPKE* >Glyma06g43820.2 sequence type=predicted peptide gene model=Glyma06g43820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGPIIRSLWSSTRKSFSSSSSSFSPSPPLSHSRFFSRAFAAAPATAPAAATTASSLDPSRLRNLAVIAHVDHGKTTLMDRLLRQCGADLPHERAMDSISLERERGITISSKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPADARNMSQLLDAVVRHVPPPNANIDAPFQMLVSMMEKDFYLGRILTGRIFSGVVRVGDKVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISIAGLSSPAIGHTVATVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTESGQKLEPVEEVTIEVNDEHVGLIMEALSHRRAEVTDMGPVSGTVGRTRLCLTCPSRQNIHLFNGNTVDAWF*
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