SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g43800

Feature Type:gene_model
Chromosome:Gm06
Start:46815868
stop:46817562
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g43800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62520AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 388 Blast hits to 388 proteins in 26 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 8; Plants - 376; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:23144506-23145348 FORWARD LENGTH=280 SoyBaseE_val: 2.00E-11ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1KEU9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEU9_SOYBN SoyBaseE_val: 4.00E-169ISS
UniRef100_Q6DT60UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT1G62520 (Fragment) n=1 Tax=Arabidopsis lyrata subsp. petraea RepID=Q6DT60_ARALP SoyBaseE_val: 2.00E-09ISS

Expression Patterns of Glyma06g43800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g43800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g43800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g43800
>Glyma06g43800.1   sequence type=CDS   gene model=Glyma06g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGTCCATGTCTTTGTGGGAATGAATGAGAGTGTGGTGTTCACTTTCTCTCCGCGAGAGAAGCCAGTTCTCGGAGTCACATTCCTAGCAATAATTTTGATTATATGTGTGCTTTTTTTTCAAAAAAAAAAGAATCATCACCACCAACCCCAAAACCACAACAACCCCACTCCAAACCTGAATTTGAAGCATGAATCACCATGTCCGAAACCACAACAAAGTCATCATCACCCCCAAACATCCAAGCTCGAAATACCCATCATCAACAACCAAACAAGATGGGGCCCCAAGCCATTCTTAGGTCGAGTCAAACTGATTTTCAAGGTGCAGAGTGTGCAATGCACTGTGACATGGTTCGAAAAGTTTCGCAAGGCAATGAAGGCACGCACCACCATGGTGCTCGCCGAGGGCAACGATGGCGTGGAGAACACATGGTGCATCACCGACGAGAATGAGTTCTTGGAGAGGTCGAGGGTTTGGAGGAATGGGAGGTGGTGGTGGTGGTTGTTGTTGTTGTTGTTGGGATGGGCGAGTTCGGTGACGCGGGTGGCTCCTGAAATGACAACGTCGCACCTGAAGCCGCAAGTGAACTTGTCATTGAAAAGGTTGTCGCAGGGTCAAGGGAGAAGTCCCATGAATAAAGGCACGAGCTTGGAGTTATGGAGGAAAGTATCTTCACCTCAATCTCAATCAAAGTAA
Predicted protein sequences of Glyma06g43800
>Glyma06g43800.1   sequence type=predicted peptide   gene model=Glyma06g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQVHVFVGMNESVVFTFSPREKPVLGVTFLAIILIICVLFFQKKKNHHHQPQNHNNPTPNLNLKHESPCPKPQQSHHHPQTSKLEIPIINNQTRWGPKPFLGRVKLIFKVQSVQCTVTWFEKFRKAMKARTTMVLAEGNDGVENTWCITDENEFLERSRVWRNGRWWWWLLLLLLGWASSVTRVAPEMTTSHLKPQVNLSLKRLSQGQGRSPMNKGTSLELWRKVSSPQSQSK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo