Glyma06g43650 - SoyBase

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Report for Sequence Feature Glyma06g43650

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46662954
stop:	46670508
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g43650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06230	AT	Annotation by Michelle Graham. TAIR10: global transcription factor group E4 \| chr1:1907626-1910183 FORWARD LENGTH=766	SoyBase	E_val: 1.00E-176	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0007049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle	SoyBase	N/A	ISS
GO:0009294	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG1474	KOG	Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins	JGI		ISS
PTHR22880	Panther	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	JGI		ISS
PTHR22880:SF31	Panther	BROMODOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00439	PFAM	Bromodomain	JGI		ISS
UniRef100_G7JV19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bromodomain-containing factor n=2 Tax=Medicago truncatula RepID=G7JV19_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233988C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233988C related cluster n=1 Tax=unknown RepID=UPI000233988C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g43650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g43650

Paralog	Evidence	Comments
Glyma12g14296	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g43650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g284000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g43650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g43650

Limit To All Plant Sequences

>Glyma06g43650.2   sequence type=CDS   gene model=Glyma06g43650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGGAGCCTATGGTTGGAGGAGATGATGAAGCTAGAGAGAAACAGAGATTCGGGGAGAGAAAGGTTTACACGAGGAGGAAAGTAAAGAAAGACCCTAAAGCCGTTGCTTCCGCCATTGAAAATAACGGCACCGCCACTTCCACCGTTACCAATGACAATAGTGTCAGTAACAGCACCGTTCAGAAGAGCAACACTGGTGAGGCCAAGAGCAAAAGTGATAATGTTTCGGTTCAGCCTCCGGCACGGCAACAAGCTGTGCTGGAGGATGGGGATTCGGCTCAGCCAAAAGTGGGTTCGGGATTAGAGGATGGGAATTCGGGGCAGCCACAACTGGAGGATCAAAATATGGTTCAAACTGAAGTGGGTTCAGGATTGGAGGATGGGAATAAGGCTCAGCCGCGAGGGGAGGATCAGAATATGGCACAGACGCAAGAGGGATCGAGATTGGAGGATGAGAATACAGCTCAGCCGCCAGGGGAGGATCATAATTTGGCACAGACGCAAGTGAATTCAAGATTGGAGGATGGGGATATGGCTCAACCGCAATTGGATGATCAGAATATGGTTCAACCTCAATCAGAGGATCAGAATATGGCTCAATCTCAATCAGAAGATCATATTATGGCTCAACCTCAATCAGAAGATCAGAATATGGCTCAACCTCAATCAGAGGATCCAAATATGGTTCATCCTCAATCGGAGGATCAGAATATGGCTCAACCTCTAATGGAGGATGAGAATACAGCTCTGCCACAATTGGAAGATGAGAATACAGCTCAGCCACAATTGGAAGATGAGAATACGGCTCAGCTGCAAGGAAGTTCAAAATTGGAAGATGAGAATACAGCTCAGCCGCAAGTGACTTCCAGATCAGAGGAAGGGAATACGGCACAGCCTCAAATGAGTTCAAGATCAGAGGAAGGGAATACGGCACAACCTCAAATGAGTTCAAGATCAGAGGAAGGGAATACGGCACAGCCGCAAGTGAGTTCAAGATCAGAGGATGGGAATACGGCTCAGCGGCAAGTGAGTTCAAGATCAGATGATGGGAATACGGTTCAGCTGCAAGTGAGTTCAAGAACAGAGGATGGGAATACAGCTCAGCCACAAGTGAGTTCAAAATTGGAGGGTAGAAAGTCCCCTCAGCCGGAAGTGAATTCGAGATTGGAGGATGGGAATTCTCCTCGGCCACAAGTGAATTCAAGTTTGGATGGGAATACAGTTCAGCCATCGGCAGTGCTGGTTTCTGATGACTCGCGCAGCCGGCAGCCTGATGAACCTTCTAGCCTCAATGTTCAGCAGCAGGATGATGGACCTTCAAGCCCCAACCGTCAGCAGGAGGCAGTTCCTAGCTCCCGAGACCTTATTTTGGGAAATGGGGTTGCGGAACCATGGCGGAGGGACCGAATCAAGATAAACCTGGCATCAAAATCAAAGCAGCAGATGCGGGAGCTTCGGTGGAAGCTTGAAAGTGAGCTTGGTGTTGTGAGAAGTTTGGTTAATAGGATTGAAGTGAAGCAGAGGCAAGTTGGTGGCTTTGGCAACTCAGATGTGCTTATTGACAGTGGGATTAATAATGTTGGTGGAGCCAAGCGTGCTCATTCAGAAGTGGCATCTGCTTGTGTTCCACGGGAACCTGCCAGTACCAGGCCTTTGCACCAGTTAAGTTTGTCAATGTTGGAGAATGGTCAAGGGATCTGTGAAACTGTTGAGAAGGAGAAGAGAACACCTAAAGCAAACCAATTTTATCGTAACTCAGAGTTCTTGCTTGCGAAGGACAAATTTCCGTCAGCAGAGAGTAACAAGAAGTCGAAATTAAATTGGAAGAAGCAAGGTGGGGGAGAAATGGGACATGGTTTTGGGATGGGATCTAAATTTTTCAAAAGCTGTAGTTCACTGCTTGAAAAATTGATGAGACACAAGCATGGTTGGGTGTTTAATTCTCCTGTTGATGTTGAGACTCTTGGTTTGCATGATTATTTTACTATCATCACTCATCCAATGGACTTGGGAACTGTGAAGACAAGGCTGAACAAGAATTGGTACAAATCACCAAAGGAGTTTGCGGAGGATGTGAGACTCACTTTTCGTAATGCCATGACATATAATCCACAGGGACAAGATGTTCATATTATGGCAGAGCTTTTATCAAAGATATTCGAGGACAGATGGGCTATAATCGAGTCAGATTACAATCGGGAGATGAGATATGGCTTTGATTATAGGGCAGCTCCCCCTGCACCCTCACCTTTGTCTAGAAGGGTTTCTGCATTTACACCACCACCTCTTGATATGAGAAGGATTTTGGATAGATCAGATTCAATGACACAGACTCCAAGACTCATGAGCATCACTCCATCCAGTAGAACTCCAGCTCCAAAAAAGCCAAAGGCAAAAGATCCTCATAAAAGAGACATGACATTTGAGGAAAAACAAAAACTAAGCACTAACCTTCAAAGTTTGCCTTCAGAGAAGCTTGATGCTATTGTACAAATCATTAAGAAGAGAAATTCAGCACTTAATCAACATGACGATGAAATTGAAGTGGACATTGATAGTGTGGATGCTGAGACTCTCTGGGAGCTTGATAGATTTGTTACCAACTATAAGAAAAGTTTGAGCAAAAACAAAAGGAAGGCTGAACTTGCTCGAGCTAGAGCAGAAGCTTTGCAGCAGAATGCCATCCAGAAGAGTCAGGCACCAGCTATGGCAGAGATTCCAAAAGAAACACAAACAGATGAAAGGAGTCTTCCCCAACCCTTGCCTGTGCAAGGGAGAAATCAAGCGGATAATGGGAGTAGGTCAAGCAGTTCCAGTAGCTCCAGCAGTGATTCTGGTTCTTCTTCAAGTGATTCTGATAGTGACAGTTCCTCAGCATCTGGATCTGATGCAGGGTCGCAAGGGACCTGA

Predicted protein sequences of Glyma06g43650

Limit To All Plant Sequences

>Glyma06g43650.2   sequence type=predicted peptide   gene model=Glyma06g43650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEPMVGGDDEAREKQRFGERKVYTRRKVKKDPKAVASAIENNGTATSTVTNDNSVSNSTVQKSNTGEAKSKSDNVSVQPPARQQAVLEDGDSAQPKVGSGLEDGNSGQPQLEDQNMVQTEVGSGLEDGNKAQPRGEDQNMAQTQEGSRLEDENTAQPPGEDHNLAQTQVNSRLEDGDMAQPQLDDQNMVQPQSEDQNMAQSQSEDHIMAQPQSEDQNMAQPQSEDPNMVHPQSEDQNMAQPLMEDENTALPQLEDENTAQPQLEDENTAQLQGSSKLEDENTAQPQVTSRSEEGNTAQPQMSSRSEEGNTAQPQMSSRSEEGNTAQPQVSSRSEDGNTAQRQVSSRSDDGNTVQLQVSSRTEDGNTAQPQVSSKLEGRKSPQPEVNSRLEDGNSPRPQVNSSLDGNTVQPSAVLVSDDSRSRQPDEPSSLNVQQQDDGPSSPNRQQEAVPSSRDLILGNGVAEPWRRDRIKINLASKSKQQMRELRWKLESELGVVRSLVNRIEVKQRQVGGFGNSDVLIDSGINNVGGAKRAHSEVASACVPREPASTRPLHQLSLSMLENGQGICETVEKEKRTPKANQFYRNSEFLLAKDKFPSAESNKKSKLNWKKQGGGEMGHGFGMGSKFFKSCSSLLEKLMRHKHGWVFNSPVDVETLGLHDYFTIITHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFRNAMTYNPQGQDVHIMAELLSKIFEDRWAIIESDYNREMRYGFDYRAAPPAPSPLSRRVSAFTPPPLDMRRILDRSDSMTQTPRLMSITPSSRTPAPKKPKAKDPHKRDMTFEEKQKLSTNLQSLPSEKLDAIVQIIKKRNSALNQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKNKRKAELARARAEALQQNAIQKSQAPAMAEIPKETQTDERSLPQPLPVQGRNQADNGSRSSSSSSSSSDSGSSSSDSDSDSSSASGSDAGSQGT*

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