Glyma06g43610 - SoyBase

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Report for Sequence Feature Glyma06g43610

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46613728
stop:	46619563
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g43610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31130	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). \| chr2:13263829-13265534 REVERSE LENGTH=419	SoyBase	E_val: 9.00E-20	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_UPI0002339889	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339889 related cluster n=1 Tax=unknown RepID=UPI0002339889	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g43610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g43610

Paralog	Evidence	Comments
Glyma12g14350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g43610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g179200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g43610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g43610

Limit To All Plant Sequences

>Glyma06g43610.2   sequence type=transcript   gene model=Glyma06g43610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTATCACGTAGAACATCATAGGAATAATGAAGACTGAAGAGTACACGTGTGCAAGGTAGGGTCATCAAGAGCTGAATCTTTAGTGTGTACGTTTCCTTCTTATTCTGTTCCTCCTCGTACACTTTTCTCCGCACAAGTCACAATTCCTTCCAAGTTTTATCAAACTGTTCCCAATCTTTTCGTGTTCGAATCTTCTTCATCTTTTTTTGTCCCTTCGAAAAGCTAAGGAATTGGTGAATTGGTGTATGACATGAAGCCTTCTGCAAGGAGTTCATAGATTTTCTCTTCTTAGAATAATCAATTAGAACCACCTTGAAGTTGAGACAAGAGTAATTGCAGCCTTATTTTAATTAGACAATATCAGGACAAATCACTATTCAAGAGATATTATGATCACTATGGATGTAAAAGGTATAAGATGGGTTGGAAATATGTACCAGAAATTTGAGAATATGTTCCTGGAGGCAGAAGACGTGATGTACGAGGATACAGTTAAATACATAGAGAATCAGATGCAGACTGTTGGGGAAAGTGTTAAAAAGTTATATTCAGAAATTGTGGGAGATTTACTTCCCCCAGGTGAAAAGGTAAGCATTGAATTGCCTATTGATAAATGTGCGGATGCTGGGCTCTATAAGAAGCCATTCCATGTTTATAAGGAAAGACATGTAAAAGCTGATACCAAGCAAACAACTGAGGATTCAAGGATTGTTCTTGGTGTTGATAATGTTGCCAGACTTGCTTCTTCCACATTATCTTTGAGAAATTCTGTCAAAGAAAGCAATTTTAGTTCACCTTCAAGACAGTATGTTAGAAGAATGGATGTTATATCAAACCTTGGTATTGATGAAAATCCAGTAAATAAAAAAATGGCTGTGACCAATATAATCAATGAAACCACTTTGGCAGAAACAGTTGCATGCCGGACATCACAATCTTGTGAGATCTCAAATGAAAATGAAAATCAGAACCATGGAGTTACTGTTTCAAAGCCAGCCTCAGCAAAAGTGGCAAGGCTTGCCTCTGACACAGATTGTTCAAATGAAATTGAAGATGCTAGTACCAAACAATTCCCCAATGTTCCGCAACTAGTTAAAGCAGCTGAAGAGAAACCCGTTGATAAAAGTTCTTCCTCCTGTGTCCCATTTGGAGAGCCAGTTGAACAAGGTCATAAAACCATGCAAGAAGATCATCTGAAGCTTGAGGAAGCCTGTGTTATGGTGAATGGAGATGAAATCCAATTACCTCCCAAAGCAGGTGGTAATTTAAATACTAAAAAGAAAAAGGCGCGACAAACCTTTTCTTTGTCAAAGAAGTCTGCCAGAAAGCAAGAGTATAAGGAGCTTGCAGCATGGCATATGAACAGTGAAAAAGTAAAGGGAGATTGCATGGAGAATTTAGATCCAACTTTACCACAAGATAATAAAAAATTACTGCTTCCTAGTATGTCTGAACCTGAATGGGAGCTTCTCTAATTCTAAATGCCAGGATGATTAAGTTGTGTTCATACAAAGTCAATCCTACAAGTTCGGATTCACTCATAAGTCCATGTGTGGAGATTAAGATGCCCTACTGGAAATTTAAGATGCTGAAATGATATAAATTCATACTATATTTCTGCTATATTTATAGTTCTTTCCTAGCATCTAAACTCTCCTACACAACCTTTTTCTTTTTCCTGCTCACAGATTAGAGAAAAGGGAAGCTGTAATTAAGGCCATTGAAATGAGAATGTCTAATAGAATAAAAGAAACTTCTATCTATTTTACAAATACTGAAAGTTTTTATTTACATATTCTCCACTTATTGCCTTGCCATTGTCAATGGCACGTTCTTTCTGATTGATTTCTGTTAAATGTATATTTTTGGTTCAGTTATTTTGTTAGTAACTATTTCATGATCCTAAAATGTCTCTTGAAGGGAATACAGCAAGTTGTTCCCATCAAGTCATCAACAAGTGACTTTTGGTGCCT

Coding sequences of Glyma06g43610

Limit To All Plant Sequences

>Glyma06g43610.1   sequence type=CDS   gene model=Glyma06g43610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCACTATGGATGTAAAAGGTATAAGATGGGTTGGAAATATGTACCAGAAATTTGAGAATATGTTCCTGGAGGCAGAAGACGTGATGTACGAGGATACAGTTAAATACATAGAGAATCAGATGCAGACTGTTGGGGAAAGTGTTAAAAAGTTATATTCAGAAATTGTGGGAGATTTACTTCCCCCAGGTGAAAAGGTAAGCATTGAATTGCCTATTGATAAATGTGCGGATGCTGGGCTCTATAAGAAGCCATTCCATGTTTATAAGGAAAGACATGTAAAAGCTGATACCAAGCAAACAACTGAGGATTCAAGGATTGTTCTTGGTGTTGATAATGTTGCCAGACTTGCTTCTTCCACATTATCTTTGAGAAATTCTGTCAAAGAAAGCAATTTTAGTTCACCTTCAAGACAGTATGTTAGAAGAATGGATGTTATATCAAACCTTGGTATTGATGAAAATCCAGTAAATAAAAAAATGGCTGTGACCAATATAATCAATGAAACCACTTTGGCAGAAACAGTTGCATGCCGGACATCACAATCTTGTGAGATCTCAAATGAAAATGAAAATCAGAACCATGGAGTTACTGTTTCAAAGCCAGCCTCAGCAAAAGTGGCAAGGCTTGCCTCTGACACAGATTGTTCAAATGAAATTGAAGATGCTAGTACCAAACAATTCCCCAATGTTCCGCAACTAGTTAAAGCAGCTGAAGAGAAACCCGTTGATAAAAGTTCTTCCTCCTGTGTCCCATTTGGAGAGCCAGTTGAACAAGGTCATAAAACCATGCAAGAAGATCATCTGAAGCTTGAGGAAGCCTGTGTTATGGTGAATGGAGATGAAATCCAATTACCTCCCAAAGCAGGTGGTAATTTAAATACTAAAAAGGTACACACTCCCCCCCTCATTTTATTTGGTACATGTTCATATTCAACTCTAACCAAAGTATGTTTCCAATTTAAGAAAAAGGCGCGACAAACCTTTTCTTTGTCAAAGAAGTCTGCCAGAAAGCAAGAGTATAAGGAGCTTGCAGCATGGCATATGAACAGTGAAAAAGTAAAGGGAGATTGCATGGAGAATTTAGATCCAACTTTACCACAAGATAATAAAAAATTACTGCTTCCTAGTATGTCTGAACCTGAATGGGAGCTTCTCTAA

>Glyma06g43610.2   sequence type=CDS   gene model=Glyma06g43610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCACTATGGATGTAAAAGGTATAAGATGGGTTGGAAATATGTACCAGAAATTTGAGAATATGTTCCTGGAGGCAGAAGACGTGATGTACGAGGATACAGTTAAATACATAGAGAATCAGATGCAGACTGTTGGGGAAAGTGTTAAAAAGTTATATTCAGAAATTGTGGGAGATTTACTTCCCCCAGGTGAAAAGGTAAGCATTGAATTGCCTATTGATAAATGTGCGGATGCTGGGCTCTATAAGAAGCCATTCCATGTTTATAAGGAAAGACATGTAAAAGCTGATACCAAGCAAACAACTGAGGATTCAAGGATTGTTCTTGGTGTTGATAATGTTGCCAGACTTGCTTCTTCCACATTATCTTTGAGAAATTCTGTCAAAGAAAGCAATTTTAGTTCACCTTCAAGACAGTATGTTAGAAGAATGGATGTTATATCAAACCTTGGTATTGATGAAAATCCAGTAAATAAAAAAATGGCTGTGACCAATATAATCAATGAAACCACTTTGGCAGAAACAGTTGCATGCCGGACATCACAATCTTGTGAGATCTCAAATGAAAATGAAAATCAGAACCATGGAGTTACTGTTTCAAAGCCAGCCTCAGCAAAAGTGGCAAGGCTTGCCTCTGACACAGATTGTTCAAATGAAATTGAAGATGCTAGTACCAAACAATTCCCCAATGTTCCGCAACTAGTTAAAGCAGCTGAAGAGAAACCCGTTGATAAAAGTTCTTCCTCCTGTGTCCCATTTGGAGAGCCAGTTGAACAAGGTCATAAAACCATGCAAGAAGATCATCTGAAGCTTGAGGAAGCCTGTGTTATGGTGAATGGAGATGAAATCCAATTACCTCCCAAAGCAGGTGGTAATTTAAATACTAAAAAGAAAAAGGCGCGACAAACCTTTTCTTTGTCAAAGAAGTCTGCCAGAAAGCAAGAGTATAAGGAGCTTGCAGCATGGCATATGAACAGTGAAAAAGTAAAGGGAGATTGCATGGAGAATTTAGATCCAACTTTACCACAAGATAATAAAAAATTACTGCTTCCTAGTATGTCTGAACCTGAATGGGAGCTTCTCTAA

Predicted protein sequences of Glyma06g43610

Limit To All Plant Sequences

>Glyma06g43610.1   sequence type=predicted peptide   gene model=Glyma06g43610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITMDVKGIRWVGNMYQKFENMFLEAEDVMYEDTVKYIENQMQTVGESVKKLYSEIVGDLLPPGEKVSIELPIDKCADAGLYKKPFHVYKERHVKADTKQTTEDSRIVLGVDNVARLASSTLSLRNSVKESNFSSPSRQYVRRMDVISNLGIDENPVNKKMAVTNIINETTLAETVACRTSQSCEISNENENQNHGVTVSKPASAKVARLASDTDCSNEIEDASTKQFPNVPQLVKAAEEKPVDKSSSSCVPFGEPVEQGHKTMQEDHLKLEEACVMVNGDEIQLPPKAGGNLNTKKVHTPPLILFGTCSYSTLTKVCFQFKKKARQTFSLSKKSARKQEYKELAAWHMNSEKVKGDCMENLDPTLPQDNKKLLLPSMSEPEWELL*

>Glyma06g43610.2   sequence type=predicted peptide   gene model=Glyma06g43610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITMDVKGIRWVGNMYQKFENMFLEAEDVMYEDTVKYIENQMQTVGESVKKLYSEIVGDLLPPGEKVSIELPIDKCADAGLYKKPFHVYKERHVKADTKQTTEDSRIVLGVDNVARLASSTLSLRNSVKESNFSSPSRQYVRRMDVISNLGIDENPVNKKMAVTNIINETTLAETVACRTSQSCEISNENENQNHGVTVSKPASAKVARLASDTDCSNEIEDASTKQFPNVPQLVKAAEEKPVDKSSSSCVPFGEPVEQGHKTMQEDHLKLEEACVMVNGDEIQLPPKAGGNLNTKKKKARQTFSLSKKSARKQEYKELAAWHMNSEKVKGDCMENLDPTLPQDNKKLLLPSMSEPEWELL*

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