Glyma06g43590 - SoyBase

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Report for Sequence Feature Glyma06g43590

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46585295
stop:	46595384
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g43590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF275	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
UniRef100_G7JCJ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Menaquinone biosynthesis methyltransferase ubiE n=1 Tax=Medicago truncatula RepID=G7JCJ7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LSB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSB3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g43590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g43590

Paralog	Evidence	Comments
Glyma12g14360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g43590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
no correspondence	Wm82.a1.v1.1	IGC	Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

References for Glyma06g43590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g43590

Limit To All Plant Sequences

>Glyma06g43590.3   sequence type=transcript   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGTTGTCACTTGCACACACAGTAACGGAACACAACAATGGCTCTGTCTTCGCCACTTCAGAACCTCTCTGCACTCATCTCCGCCAAAGGCAATGCCACCGCCGTCGCCACACCCCGGCCGCCGAGAGGGCGGCCCTGGGCGGTTCACGCGGCGGCGTCCGACACCACCGCCTCTGCGTCGGTGCAAATGGGTGAGTACGAAGAAGGGAAGCTGGAGCGACCAAAGTGGGTTGGGGAGACCCCTCTTTCACGTCTCGTTCAAGCTCTCATCTCCTTCAAGCCTTTCTACTCTGTTCTCAAGCTTGGTGCTAGAAGGGCTTTGATAAGTACAGCTGAGAAGAACAACATACCTTGGAGGCAAATGGCGAAAGAGATTTTAGAGTCAGAAGTTTATAGGGAGCTGGACAACATTCAAAACCAGTCTTTAGTGTACCCTGATTATTATTTGAATCCATTCCATGCATATGATGAGGGCAATCTTACATGGCTGGCGGCAGCAGAAGCAGAGGCTGCTACATTGTCAATAGCTAAACGAGCAATTCCAGATGCTTCTTCAACGCAGGAAGCAAATCAGATACTGCGTGGCAATTGGCTTCGTGCAATTGAACAACACCATATGCAGTATTCAGAATCATCTGTGATCAATGACATTCTAGATATTGGATGCTCTGTAGGTATAAGCACAAGATATCTTGCAGACAAGTTCCCCACAGCCAAAGTCACCGGGCTAGATCTGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGAACATCACCCGGAAAATTTCCTAAAAGATGGATACATGCAAATGGGGAAGACACAGGCTTGCCTTCTAAGTCGTTCGACCTTGTTTCTATTGCTTTTGTGCTTCATGAATGTCCAACAAGAGTTATAGTGACTTTGGTAAGAGAGGCATTCCGGCTCCTTTGGCCAGGAGGCACACTAGATTTGACAGATTTTTTGGTATATAAAGTCCTTCAGGAATTGTCTCCAGTTCTCTTTACATTGGTTAAGAGCACAGAAGCCTTTCTAGATGAGTATTACTTGACTGATATGGATGAAACACTGAGGGAAGCAGGTTTTGTGAACATAACATCAATTCTTACAGACCCCAGACATGTGACAATTACTGCAACAGTGCCTCAATGAAACATCACACCTTCTTGAGATATTTTATTTATTAAGATGCTTAAAATGATTTTATTGATTCATAATGCATGGCTGTTCCTTTTATCTTCCTTATCAGTGTACTGGTTTATTATGGAATCTCTTTCTATTTTCCTTAACAATAGCAAGAGCAGCTCACAAACCTTGCCTTCAATTTGAGGCATGCGTATGCTGCGGTATTTGATTAATCAGTG

>Glyma06g43590.4   sequence type=transcript   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAATATCTCATGGCTTGAAATTTATTATTTCATCCTTATCCTAAGTCGGGATGGATTCAAACGGATACCCATGATACTCCATGCTCAAGCTTGGTGCTAGACGGGCTTTGATAAGTACAGCTGAGAAGAACAACATACCTTGGAGGAAAATGGCACAAGAGATTTTAGAGTCAGAAGTCTATAGGGAGCTGAACAGCATTCAAAACCAGTCTTTAGTGTATCCTGATTGTAGCAGCAGAAGCAGAGGCTGCTACAATGTCAATGGCCAGACGAGCACTTCCAGACGCTTCTTCAATACAGGAAGCAAATCAGATACTGCATGGCAATTGGCTTCGTGCAATTGAACAACACCATATAGAGCATTCAGAATCATCTGTGATTAATGACATTCTAGATATTGGATGCTCTGTAGGTATAAGCACAAGATATCTTGTAGACAAGTTCCACACGGCCAAAGTCACTGGGCTAGATCTGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGAACATCACCCGGAAAATTTCCTAAAAGATGGATACATGCAAATGGGGAAGACACAGGCTTGCCTTCTAAGTCGTTCGACCTTGTTTCTATTGCTTTTGTGCTTCATGAATGTCCAACAAGAGTTATAGTGACTTTGGTAAGAGAGGCATTCCGGCTCCTTTGGCCAGGAGGCACACTAGATTTGACAGATTTTTTGGTATATAAAGTCCTTCAGGAATTGTCTCCAGTTCTCTTTACATTGGTTAAGAGCACAGAAGCCTTTCTAGATGAGTATTACTTGACTGATATGGATGAAACACTGAGGGAAGCAGGTTTTGTGAACATAACATCAATTCTTACAGACCCCAGACATGTGACAATTACTGCAACAGTGCCTCAATGAAACATCACACCTTCTTGAGATATTTTATTTATTAAGATGCTTAAAATGATTTTATTGATTCATAATGCATGGCTGTTCCTTTTATCTTCCTTATCAGTGTACTGGTTTATTATGGAATCTCTTTCTATTTTCCTTAACAATAGCAAGAGCAGCTCACAAACCTTGCCTTCAATTTGAGGCATGCGTATGCTGCGGTATTTGATTAATCAGTGAAA

>Glyma06g43590.5   sequence type=transcript   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATCTTAAATTATATAAAAAATTTAAAATAAAATTAACAAATAATAAATTAAATTTTAGACGGATATATCACTAGTAGTCACATTTTCATTTCTGATATTAATTTCAATTAAAAAAGTTGAATAATTTCTGAATTCATGTTCGATTAACTCCAATATTTTTCCTTAGAGTCGGGATGGATTCAAACGGATACCCATGATACTCCATGCTCAAGCTTGGTGCTAGACGGGCTTTGATAAGTACAGCTGAGAAGAACAACATACCTTGGAGGAAAATGGCACAAGAGATTTTAGAGTCAGAAGTCTATAGGGAGCTGAACAGCATTCAAAACCAGTCTTTAGTGTATCCTGATTGTAGCAGCAGAAGCAGAGGCTGCTACAATGTCAATGGCCAGACGAGCACTTCCAGACGCTTCTTCAATACAGGAAGCAAATCAGATACTGCATGGCAATTGGCTTCGTGCAATTGAACAACACCATATAGAGCATTCAGAATCATCTGTGATTAATGACATTCTAGATATTGGATGCTCTGTAGGTATAAGCACAAGATATCTTGTAGACAAGTTCCACACGGCCAAAGTCACTGGGCTAGATCTGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGAACATCACCCGGAAAATTTCCTAAAAGATGGATACATGCAAATGGGGAAGACACAGGCTTGCCTTCTAAGTCGTTCGACCTTGTTTCTATTGCTTTTGTGCTTCATGAATGTCCAACAAGAGTTATAGTGACTTTGGTAAGAGAGGCATTCCGGCTCCTTTGGCCAGGAGGCACACTAGATTTGACAGATTTTTTGGTATATAAAGTCCTTCAGGAATTGTCTCCAGTTCTCTTTACATTGGTTAAGAGCACAGAAGCCTTTCTAGATGAGTATTACTTGACTGATATGGATGAAACACTGAGGGAAGCAGGTTTTGTGAACATAACATCAATTCTTACAGACCCCAGACATGTGACAATTACTGCAACAGTGCCTCAATGAAACATCACACCTTCTTGAGATATTTTATTTATTAAGATGCTTAAAATGATTTTATTGATTCATAATGCATGGCTGTTCCTTTTATCTTCCTTATCAGTGTACTGGTTTATTATGGAATCTCTTTCTATTTTCCTTAACAATAGCAAGAGCAGCTCACAAACCTTGCCTTCAATTTGAGGCATGCGTATGCTGCGGTATTTGATTAATCAGTGAAA

Coding sequences of Glyma06g43590

Limit To All Plant Sequences

>Glyma06g43590.2   sequence type=CDS   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGTCTTCGCCACTTCAGAACCTCTCTGCACTCATCTCCGCCAAAGGCAATGCCACCGCCGTCGCCACACCCCGGCCGCCGAGAGGGCGGCCCTGGGCGGTTCACGCGGCGGCGTCCGACACCACCGCCTCTGCGTCGGTGCAAATGGGTGAGTACGAAGAAGGGAAGCTGGAGCGACCAAAGTGGGTTGGGGAGACCCCTCTTTCACGTCTCGTTCAAGCTCTCATCTCCTTCAAGCCTTTCTACTCTGTTCTCAAGCTTGGTGCTAGAAGGGCTTTGATAAGTACAGCTGAGAAGAACAACATACCTTGGAGGCAAATGGCGAAAGAGATTTTAGAGTCAGAAGTTTATAGGGAGCTGGACAACATTCAAAACCAGTCTTTAGTGTACCCTGATTATTATTTGAATCCATTCCATGCATATGATGAGGGCAATCTTACATGGCTGGCGGCAGCAGAAGCAGAGGCTGCTACATTGTCAATAGCTAAACGAGCAATTCCAGATGCTTCTTCAACGCAGGAAGCAAATCAGATACTGCGTGGCAATTGGCTTCGTGCAATTGAACAACACCATATGCAGTATTCAGAATCATCTGTGATCAATGACATTCTAGATATTGGATGCTCTGTAGGTATAAGCACAAGATATCTTGCAGACAAGTTCCCCACAGCCAAAGTCACCGGGCTAGATCTGTCACCCTATTTTCTTGCTGTGGCTCAGCATAAGGAAAAGAATGCACCGCCTAGAAAATTTCCTATAAGATGGATACATGCAAATGGAGAAGACACGGGCCTGCCTTCTAAATCATTCAACCTTGTTTCTATTGCTTTTGTGGTTCATGAATGTCCTGCAAGAGCTATAGTGAATTTAGTGAGGGAAGCATTCCGTCTCCTTCGGCCTGGAGGCACACTAGCTTTGGTAGATTCTACGACAAAGTCAAAGGTCCTTCAGGAATTGTCTCCTGTCCTGTTTACATTGCTTAAGAGCACAGAACCCTTTCTGGATGAGTATTACTTGACTGATATGGATGAAACACTGAGGGAAGCTGGTTTTGGGAACATAACATCAATCCTTACGGACCCCAGACACGTGACAATTACTGCAACAGTGCCTTAA

>Glyma06g43590.3   sequence type=CDS   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGTCTTCGCCACTTCAGAACCTCTCTGCACTCATCTCCGCCAAAGGCAATGCCACCGCCGTCGCCACACCCCGGCCGCCGAGAGGGCGGCCCTGGGCGGTTCACGCGGCGGCGTCCGACACCACCGCCTCTGCGTCGGTGCAAATGGGTGAGTACGAAGAAGGGAAGCTGGAGCGACCAAAGTGGGTTGGGGAGACCCCTCTTTCACGTCTCGTTCAAGCTCTCATCTCCTTCAAGCCTTTCTACTCTGTTCTCAAGCTTGGTGCTAGAAGGGCTTTGATAAGTACAGCTGAGAAGAACAACATACCTTGGAGGCAAATGGCGAAAGAGATTTTAGAGTCAGAAGTTTATAGGGAGCTGGACAACATTCAAAACCAGTCTTTAGTGTACCCTGATTATTATTTGAATCCATTCCATGCATATGATGAGGGCAATCTTACATGGCTGGCGGCAGCAGAAGCAGAGGCTGCTACATTGTCAATAGCTAAACGAGCAATTCCAGATGCTTCTTCAACGCAGGAAGCAAATCAGATACTGCGTGGCAATTGGCTTCGTGCAATTGAACAACACCATATGCAGTATTCAGAATCATCTGTGATCAATGACATTCTAGATATTGGATGCTCTGTAGGTATAAGCACAAGATATCTTGCAGACAAGTTCCCCACAGCCAAAGTCACCGGGCTAGATCTGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGAACATCACCCGGAAAATTTCCTAAAAGATGGATACATGCAAATGGGGAAGACACAGGCTTGCCTTCTAAGTCGTTCGACCTTGTTTCTATTGCTTTTGTGCTTCATGAATGTCCAACAAGAGTTATAGTGACTTTGGTAAGAGAGGCATTCCGGCTCCTTTGGCCAGGAGGCACACTAGATTTGACAGATTTTTTGGTATATAAAGTCCTTCAGGAATTGTCTCCAGTTCTCTTTACATTGGTTAAGAGCACAGAAGCCTTTCTAGATGAGTATTACTTGACTGATATGGATGAAACACTGAGGGAAGCAGGTTTTGTGAACATAACATCAATTCTTACAGACCCCAGACATGTGACAATTACTGCAACAGTGCCTCAATGA

>Glyma06g43590.4   sequence type=CDS   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCCAGACGAGCACTTCCAGACGCTTCTTCAATACAGGAAGCAAATCAGATACTGCATGGCAATTGGCTTCGTGCAATTGAACAACACCATATAGAGCATTCAGAATCATCTGTGATTAATGACATTCTAGATATTGGATGCTCTGTAGGTATAAGCACAAGATATCTTGTAGACAAGTTCCACACGGCCAAAGTCACTGGGCTAGATCTGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGAACATCACCCGGAAAATTTCCTAAAAGATGGATACATGCAAATGGGGAAGACACAGGCTTGCCTTCTAAGTCGTTCGACCTTGTTTCTATTGCTTTTGTGCTTCATGAATGTCCAACAAGAGTTATAGTGACTTTGGTAAGAGAGGCATTCCGGCTCCTTTGGCCAGGAGGCACACTAGATTTGACAGATTTTTTGGTATATAAAGTCCTTCAGGAATTGTCTCCAGTTCTCTTTACATTGGTTAAGAGCACAGAAGCCTTTCTAGATGAGTATTACTTGACTGATATGGATGAAACACTGAGGGAAGCAGGTTTTGTGAACATAACATCAATTCTTACAGACCCCAGACATGTGACAATTACTGCAACAGTGCCTCAATGA

>Glyma06g43590.5   sequence type=CDS   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCCAGACGAGCACTTCCAGACGCTTCTTCAATACAGGAAGCAAATCAGATACTGCATGGCAATTGGCTTCGTGCAATTGAACAACACCATATAGAGCATTCAGAATCATCTGTGATTAATGACATTCTAGATATTGGATGCTCTGTAGGTATAAGCACAAGATATCTTGTAGACAAGTTCCACACGGCCAAAGTCACTGGGCTAGATCTGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGAACATCACCCGGAAAATTTCCTAAAAGATGGATACATGCAAATGGGGAAGACACAGGCTTGCCTTCTAAGTCGTTCGACCTTGTTTCTATTGCTTTTGTGCTTCATGAATGTCCAACAAGAGTTATAGTGACTTTGGTAAGAGAGGCATTCCGGCTCCTTTGGCCAGGAGGCACACTAGATTTGACAGATTTTTTGGTATATAAAGTCCTTCAGGAATTGTCTCCAGTTCTCTTTACATTGGTTAAGAGCACAGAAGCCTTTCTAGATGAGTATTACTTGACTGATATGGATGAAACACTGAGGGAAGCAGGTTTTGTGAACATAACATCAATTCTTACAGACCCCAGACATGTGACAATTACTGCAACAGTGCCTCAATGA

Predicted protein sequences of Glyma06g43590

Limit To All Plant Sequences

>Glyma06g43590.2   sequence type=predicted peptide   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSSPLQNLSALISAKGNATAVATPRPPRGRPWAVHAAASDTTASASVQMGEYEEGKLERPKWVGETPLSRLVQALISFKPFYSVLKLGARRALISTAEKNNIPWRQMAKEILESEVYRELDNIQNQSLVYPDYYLNPFHAYDEGNLTWLAAAEAEAATLSIAKRAIPDASSTQEANQILRGNWLRAIEQHHMQYSESSVINDILDIGCSVGISTRYLADKFPTAKVTGLDLSPYFLAVAQHKEKNAPPRKFPIRWIHANGEDTGLPSKSFNLVSIAFVVHECPARAIVNLVREAFRLLRPGGTLALVDSTTKSKVLQELSPVLFTLLKSTEPFLDEYYLTDMDETLREAGFGNITSILTDPRHVTITATVP*

>Glyma06g43590.3   sequence type=predicted peptide   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSSPLQNLSALISAKGNATAVATPRPPRGRPWAVHAAASDTTASASVQMGEYEEGKLERPKWVGETPLSRLVQALISFKPFYSVLKLGARRALISTAEKNNIPWRQMAKEILESEVYRELDNIQNQSLVYPDYYLNPFHAYDEGNLTWLAAAEAEAATLSIAKRAIPDASSTQEANQILRGNWLRAIEQHHMQYSESSVINDILDIGCSVGISTRYLADKFPTAKVTGLDLSPYFLAVAQHKEKRTSPGKFPKRWIHANGEDTGLPSKSFDLVSIAFVLHECPTRVIVTLVREAFRLLWPGGTLDLTDFLVYKVLQELSPVLFTLVKSTEAFLDEYYLTDMDETLREAGFVNITSILTDPRHVTITATVPQ*

>Glyma06g43590.4   sequence type=predicted peptide   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMARRALPDASSIQEANQILHGNWLRAIEQHHIEHSESSVINDILDIGCSVGISTRYLVDKFHTAKVTGLDLSPYFLAVAQHKEKRTSPGKFPKRWIHANGEDTGLPSKSFDLVSIAFVLHECPTRVIVTLVREAFRLLWPGGTLDLTDFLVYKVLQELSPVLFTLVKSTEAFLDEYYLTDMDETLREAGFVNITSILTDPRHVTITATVPQ*

>Glyma06g43590.5   sequence type=predicted peptide   gene model=Glyma06g43590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMARRALPDASSIQEANQILHGNWLRAIEQHHIEHSESSVINDILDIGCSVGISTRYLVDKFHTAKVTGLDLSPYFLAVAQHKEKRTSPGKFPKRWIHANGEDTGLPSKSFDLVSIAFVLHECPTRVIVTLVREAFRLLWPGGTLDLTDFLVYKVLQELSPVLFTLVKSTEAFLDEYYLTDMDETLREAGFVNITSILTDPRHVTITATVPQ*

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