Glyma06g43553 - SoyBase

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Report for Sequence Feature Glyma06g43553

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46570194
stop:	46571498
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g43553

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00900	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S7p/S5e family protein \| chrC:97478-97945 REVERSE LENGTH=155	SoyBase	E_val: 4.00E-38	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0000312	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid small ribosomal subunit	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015935	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR11205	Panther	RIBOSOMAL PROTEIN S7	JGI		ISS
PTHR11205:SF13	Panther	30S RIBOSOMAL PROTEIN S7	JGI		ISS
PF00177	PFAM	Ribosomal protein S7p/S5e	JGI		ISS
UniRef100_H2F655	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ribosomal protein S7 n=3 Tax=Agavoideae RepID=H2F655_9ASPA	SoyBase	E_val: 1.00E-35	ISS
UniRef100_H2F655	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein S7 n=3 Tax=Agavoideae RepID=H2F655_9ASPA	SoyBase	E_val: 1.00E-35	ISS

Expression Patterns of Glyma06g43553

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g43553 not represented in the dataset	Glyma06g43553 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g43553 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g43553

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g43553

Limit To All Plant Sequences

>Glyma06g43553.1   sequence type=CDS   gene model=Glyma06g43553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCCGCGGATAGGATCCACACAAGAAAAAACACTTGCCATTCGTTGGTTACTAGGGGCATCTCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGTAGTGGCGATGCCATACGCCAAAAGGAAGAGACTCATAGAATGGCAGATGCAAATAGAGCTTTTGCACATTTTCGTTAA

Predicted protein sequences of Glyma06g43553

Limit To All Plant Sequences

>Glyma06g43553.1   sequence type=predicted peptide   gene model=Glyma06g43553   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPRIGSTQEKTLAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRQKEETHRMADANRAFAHFR*

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