Glyma06g43540 - SoyBase

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Report for Sequence Feature Glyma06g43540

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46565091
stop:	46566203
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g43540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45890	AT	Annotation by Michelle Graham. TAIR10: senescence-associated gene 12 \| chr5:18613300-18614759 FORWARD LENGTH=346	SoyBase	E_val: 6.00E-130	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0007568	GO-bp	Annotation by Michelle Graham. GO Biological Process: aging	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0010282	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: senescence-associated vacuole	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
KOG1543	KOG	Cysteine proteinase Cathepsin L	JGI		ISS
PTHR12411	Panther	CYSTEINE PROTEASE FAMILY C1-RELATED	JGI		ISS
PTHR12411:SF44	Panther	CATHEPSIN L-RELATED	JGI		ISS
PF00112	PFAM	Papain family cysteine protease	JGI		ISS
PF08246	PFAM	Cathepsin propeptide inhibitor domain (I29)	JGI		ISS
UniRef100_I1KES3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KES3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6Y1E6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine protease 8 n=1 Tax=Trifolium repens RepID=Q6Y1E6_TRIRP	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g43540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g43540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g283100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g43540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g43540

Limit To All Plant Sequences

>Glyma06g43540.1   sequence type=CDS   gene model=Glyma06g43540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGCAAAAATCAACTCTATCATATTTCATTGGCATTGCTTTTCTGCATGGGATTCTTGGCTTTTCAAGTCACATGTCGCACTCTCCAAGATGCCTCCATGTATGAGAGGCATGCGCAATGGATGGCACGTTATGCCAAAGTGTACAAGGACCCTCAGGAAAGGGAAAAGCGTTTCAGGATATTTAAGGAAAATGTGAATTACATTGAAACCTTCAACAGTGCTGACAACAAATCTTACAAGCTAGACATTAATCAATTTGCAGACCTCACTAACGAAGAGTTCATTGCACCCAGAAATAGATTCAAGGGGCACATGTGTTCCTCAATCACAAGAACAACCACTTTTAAGTATGAAAATGTGACTGTAATACCATCCACAGTGGATTGGAGGCAGAAGGGTGCAGTGACACCCATCAAGGACCAAGGCCAATGTGGATGTTGTTGGGCTTTTTCCGCTGTTGCAGCAACTGAAGGAATTCATGCACTGAATGCTGGAAAATTAATCTCTTTGTCCGAACAAGAAGTTGTTGATTGTGACACAAAAGGTCAGGACCAAGGTTGTGCGGGCGGTTTTATGGATGGTGCTTTCAAATTCATCATCCAAAACCATGGACTCAACACTGAACCCAATTACCCCTACAAGGCTGCTGATGGAAAATGCAATGCTAAGGCTGCAGCTAACCACGCTGCTACTATTACTGGCTATGAAGATGTCCCTGTTAACAATGAGAAGGCACTTCAAAAAGCTGTGGCTAATCAACCAGTTTCTGTAGCCATTGATGCCAGTGGCTCTGACTTTCAATTTTACAAGAGTGGTGTCTTCACTGGTTCATGTGGAACCGAGTTGGATCACGGTGTCACTGCCGTGGGTTATGGTGTTAGCGCTGATGGGACTGAATATTGGTTGGTTAAGAACTCATGGGGAACTGAATGGGGCGAAGAAGGCTACATTAGGATGCAGAGGGGTGTGAAAGCTGAGGAAGGACTCTGTGGCATAGCTATGATGGCATCTTACCCTACAGCTTGA

Predicted protein sequences of Glyma06g43540

Limit To All Plant Sequences

>Glyma06g43540.1   sequence type=predicted peptide   gene model=Glyma06g43540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGKNQLYHISLALLFCMGFLAFQVTCRTLQDASMYERHAQWMARYAKVYKDPQEREKRFRIFKENVNYIETFNSADNKSYKLDINQFADLTNEEFIAPRNRFKGHMCSSITRTTTFKYENVTVIPSTVDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGIHALNAGKLISLSEQEVVDCDTKGQDQGCAGGFMDGAFKFIIQNHGLNTEPNYPYKAADGKCNAKAAANHAATITGYEDVPVNNEKALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSADGTEYWLVKNSWGTEWGEEGYIRMQRGVKAEEGLCGIAMMASYPTA*

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