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Report for Sequence Feature Glyma06g43251

Feature Type:gene_model
Chromosome:Gm06
Start:46500074
stop:46501150
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g43251
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G50260AT Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361 SoyBaseE_val: 4.00E-61ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0008234GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity SoyBaseN/AISS
PTHR12411Panther CYSTEINE PROTEASE FAMILY C1-RELATED JGI ISS
PTHR12411:SF44Panther CATHEPSIN L-RELATED JGI ISS
PF00112PFAM Papain family cysteine protease JGI ISS
UniRef100_Q6VN49UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine proteinase EP-B n=1 Tax=Medicago truncatula RepID=Q6VN49_MEDTR SoyBaseE_val: 2.00E-72ISS
UniRef100_UPI000233A2EBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A2EB related cluster n=1 Tax=unknown RepID=UPI000233A2EB SoyBaseE_val: 2.00E-99ISS

Expression Patterns of Glyma06g43251
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g43251 not represented in the dataset
Glyma06g43251 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g43251 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g280900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g43251
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g43251
>Glyma06g43251.1   sequence type=CDS   gene model=Glyma06g43251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCCAAAAATCATTTCTACCATATTGCATTTGCAATGCTTCTCTGCATGGCATTCTTGGCTTTTCAAGTCACATGTCGCACTCTCCAAGATGCATCCATGATCCTCCGAAAAGATTTTAAGGAAAATGTAAATTACATTGAAGCCTGCAACAATGCCGCCAATAAACCTTACAAGCGAGGCATTAATCAATTTGCACCCAGAAATAGATTCAAGGGGCATATGTGCTCCTCAATCATAAGAATAACTACTTTTAAGTTTGAAAACGTGACTGCAACACCATCCACAGTGGATTGTAGGCAAAAGGGAGCAGTTACACCCATCAAGGACCAAGGTCAATGTGGATGCTGTTGGGCGTTTTCTGCCGTTGCAGCAACCGAAGGAATTCATGCACTGTCAGCTGGAAAATTGATCTCATTGTCAGAACAAGAACTTGTTGATTGTGACACAAAGGCTGTGGCCAATAACCCGGTTTCCGAAGCTATTGATGCCAGTGGCTCTGACTTTCAGTTTTACAAGAGTGGTGTCTTCACTGGTTCCTGTGGAACTGAGTTGGATCACGGTGTCACTGCCGTGGGGTATGGTGTTAGTGATGATGGGACTGAATATTGGTTGGTTAAGAACTCGTGGGGAACCGAGTGGGGTGAAGAAGGTTACATTAGGATGCAAAGGGGTGTGGATTCTGAGGAAGCATTGTGTGGCATAGCTGTGCAAGCATCTTACCCTAGTGCATAA
Predicted protein sequences of Glyma06g43251
>Glyma06g43251.1   sequence type=predicted peptide   gene model=Glyma06g43251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAKNHFYHIAFAMLLCMAFLAFQVTCRTLQDASMILRKDFKENVNYIEACNNAANKPYKRGINQFAPRNRFKGHMCSSIIRITTFKFENVTATPSTVDCRQKGAVTPIKDQGQCGCCWAFSAVAATEGIHALSAGKLISLSEQELVDCDTKAVANNPVSEAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSDDGTEYWLVKNSWGTEWGEEGYIRMQRGVDSEEALCGIAVQASYPSA*






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