Glyma06g43060 - SoyBase

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Report for Sequence Feature Glyma06g43060

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46413994
stop:	46419519
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g43060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31040	AT	Annotation by Michelle Graham. TAIR10: ATP synthase protein I -related \| chr2:13209094-13211012 REVERSE LENGTH=350	SoyBase	E_val: 5.00E-154	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
UniRef100_G7JCK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase protein I n=1 Tax=Medicago truncatula RepID=G7JCK8_MEDTR	SoyBase	E_val: 1.00E-172	ISS
UniRef100_I1KEN5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEN5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g43060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g43060

Paralog	Evidence	Comments
Glyma12g15186	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g43060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g277600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g43060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g43060

Limit To All Plant Sequences

>Glyma06g43060.1   sequence type=CDS   gene model=Glyma06g43060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTTGTGAGCCACGTTTGTGTGAGATGTGTAGCCACACCCACTTCCCCAGAGTCCCCAAATTCGGCACCCTTGCCAGACCCAAGGCAAACCAAGGTTCTCCTTCCGAAGAAGAAGCCTCAGAAATGGTCCACCGGGGTGGCTCCCGGGGAGTACGGTGGCCCTCCCACCACCACCAAACTCCGCAAATACTGGGGCGGCGATGACGAAGACCCTTTGGCCTCTGATGACTATATGTGGAACAAGGAGTTTATGGGTCGCTTCCAAAAGTTGATTGAGGAACCCAATGCTCAACCCCCTCCTGCAAAGGAAGAGCCTTCAGGGTTTCTAAGCTTAAATAGAGTCATGAGCCTGGACAGTTTGGAAGTTGATTTGAGCAAAGAACTCGCAGCTCCTGTAAATCATAATGCACACCTGCAAATTGATGCAGAAACTAATGTGACAGGAAGCAATAGGGTAAGATATAAATCAGCACCAACACGTCGTGAGCAAGAAAAATGGGATAGAGCTACCAAGGCCGCAACTGGAGGCAGTGATGTGATGTTCCGGGAAATAAGGCAGTCTCGTGAAGATCCAAAAGTTTTGGCTGCTCAAGCTGAGGAGCAGTATAATAAGTTAAAGAGGAAGTTGCAAATCTTTACCTTGGGTATAGGTGGTGTTGGTCTGGTTTCAGCTTATGTTTCTTATTCCCCTGAGATTGCAGCTAGCTTTGGTGCTGGCTTTCTTGGTTCTTTGGCGTATATTCGTATGCTGGGAAGTAGCGTGGACTCGCTAAGGACTGATGGTGCAAAGGGATTTGTCAAGGGAGCAATTGGGCAGCCAAGATTACTGGTTCCTGTTGTTTTGGTCATGGTCTATAACCGCTGGAATGCGATTCTGGTTCCAGAATTTGGATCTATGCACTTAGAATTGATACCAATGCTAGTAGGTTTTTTCACATACAAGATTGCAACTTTTGCTCAAGCTATAGAGGAGGCAATTACTGTAGCTACAAGAAAGACCTGA

Predicted protein sequences of Glyma06g43060

Limit To All Plant Sequences

>Glyma06g43060.1   sequence type=predicted peptide   gene model=Glyma06g43060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVSHVCVRCVATPTSPESPNSAPLPDPRQTKVLLPKKKPQKWSTGVAPGEYGGPPTTTKLRKYWGGDDEDPLASDDYMWNKEFMGRFQKLIEEPNAQPPPAKEEPSGFLSLNRVMSLDSLEVDLSKELAAPVNHNAHLQIDAETNVTGSNRVRYKSAPTRREQEKWDRATKAATGGSDVMFREIRQSREDPKVLAAQAEEQYNKLKRKLQIFTLGIGGVGLVSAYVSYSPEIAASFGAGFLGSLAYIRMLGSSVDSLRTDGAKGFVKGAIGQPRLLVPVVLVMVYNRWNAILVPEFGSMHLELIPMLVGFFTYKIATFAQAIEEAITVATRKT*

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