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Report for Sequence Feature Glyma06g43050

Feature Type:gene_model
Chromosome:Gm06
Start:46402663
stop:46411371
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g43050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53310AT Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase 1 | chr1:19884261-19888070 REVERSE LENGTH=967 SoyBaseE_val: 0ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006099GO-bp Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0015977GO-bp Annotation by Michelle Graham. GO Biological Process: carbon fixation SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051262GO-bp Annotation by Michelle Graham. GO Biological Process: protein tetramerization SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008964GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxylase activity SoyBaseN/AISS
PF00311PFAM Phosphoenolpyruvate carboxylase JGI ISS
UniRef100_B0LXE5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxylase n=1 Tax=Arachis hypogaea RepID=B0LXE5_ARAHY SoyBaseE_val: 0ISS
UniRef100_I1KEN4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEN4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g43050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g43050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g277500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g43050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g43050
>Glyma06g43050.1   sequence type=CDS   gene model=Glyma06g43050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACACGGAACTTTGAGAAAATGGCTTCTATTGATGCTCAGTTGAGGTTGCTAGCACCAAGTAAGGTTTCTGATGATGACAAGCTTGTTGAATATGATGCTTTGTTGCTGGACCGTTTCCTTGACATTCTTCAGGATTTGCATGGCGATGATATTAGAGAAACGGTTCAAGACTGTTATGAGCTGTCTGCTGAGTATGAAGGGCAGAATAATCCTCAGAAGTTGGAGGAACTTGGGAACATGCTAACTGGTCTTGATGCTGGGGATTCTATTGTGATTTCCAAGTCGTTTGCTCATATGCTTAATTTGGCAAATTTGGCAGAAGAAGTTCAGATTGCCTACCGTAGAAGGATTAAGTTATTGAAGAAGGGTGATTTTGCTGATGAGAATTCTGCTATCACTGAGTCAGATATTGAAGAGACTTTCAAGAGGCTTGTGAATCAACTGAAGAAGACACCTCAAGAAATCTTTGATGCTTTGAAGAGTCAAACTGTAGATTTGGTCTTAACTGCTCATCCTACTCAGTCTGTTCGTAGATCTTTGCTGCAAAAGCATGGCAGGATAAGGAATTGTTTGACACAGTTGTATGCTAAAGACATAACACCGGACGATAAACAGGAGCTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGTACGGATGAAATTCGAAGGACCCCTCCTACACCACAAGATGAGATGAGAGCAGGAATGAGCTACTTTCACGAGACGATCTGGAAAGGCATACCAAAATTTTTGCGCCGGGTTGACACTGCTCTGAAGAACATTGGCATAAATGAACGTGTTCCATATAATGCCCCTGTTATTCAATTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAACCCCAGGGTAACTCCAGAAGTTACAAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATTTGTACTTCTCTCAGATTGAGGATCTCATGTTTGAGTTGTCTATGTGGCGCTGCAATGATGAGCTACGTGTTCGTTCTGATGAACTCCTTAGCTCCTCAAAGAGAGATGCAAAACATTATATTGAGTTTTGGAAACAGATTCCTCCCAATGAGCCGTATCGTGTTATTCTCGGTGATGTAAGGGACAAATTATATAATACACGTGAACGTGCTCGGCAGTTGTTAGCCAATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAGTTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGACCAACCAATAGCTGATGGAAGCCTTCTTGATTTCTTGCGCCAAGTTTCCACATTTGGGCTTTCACTTGTAAGACTTGATATCCGTCAAGAATCAGATCGGCACACTGATGTTATGGATGCTATTACAAACCACTTAGAGATTGGATCTTATCGAGAGTGGTCTGAGGAACGCAGGCAGGAATGGCTGCTATCCGAGCTCAGTGGAAAGCGCCCTCTCTTTGGTCCTGATCTTCCTAAAACAGAAGAAATTGCTGATGTATTGGAAACCTTCCATGTCATTGCGGAACTTCCTTCAGACAGCTTTGGTGCCTATATCATCTCAATGGCAACAGCTCCATCTGATGTGCTTTCTGTAGAACTTTTACAACGTGAATGTCATGTGAAGCAGCCATTAAGGGTTGTTCCATTGTTTGAAAAACTTGCTGATCTTGAGGCTGCTCCTGCTGCGGTAGCCCGCCTATTCTCTATAGATTGGTACAGAGACCGTATCAATGGGAAACAAGAAGTTATGATAGGGTACTCGGACTCGGGAAAAGATGCTGGTCGTTTCTCTGCAGCATGGGCACTATACAAGGCTCAAGAAGAGCTCATAAAGGTTGCAAAAGAGTTTGGTGTTAAGCTCACAATGTTCCATGGCAGAGGAGGAACTGTGGGAAGAGGAGGAGGTCCCACTCATCTTGCTATATTATCTCAGCCACCGGATACTATTCATGGCTCACTTCGGGTAACAGTGCAAGGTGAAGTTATTGAACAGTCATTTGGAGAGGAGCACTTGTGCTTCAGAACACTTCAGCGCTTCACTGCTGCTACACTTGAGCATGGAATGCACCCTCCTGTGGCACCAAAACCAGAGTGGCGTGCCCTCATGGATGAGATGGCTGTCATTGCTACAGAGGAGTATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAAAACGAAAGCCAAGTGGAGGAATTGAATCACTTCGTGCAATCCCTTGGATCTTTGCTTGGACTCAGACTAGGTTTCATCTACCTGTATGGCTTGGCTTTGGGGCAGCATTTAGCCATGTTATTAAGAAGGATCCAAAGAATCTCCAAATGCTTCAAGATATGTATAATCAATGGCCTTTCTTCAGGGTCAGCCTTGACTTGGTTGAGATGGTGTTCGCCAAGGGAGACCCTGGGATTGCGGCTCTTTATGACAAACTCCTAGTGTCAGAGGAACTGTGGCCATTTGGCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGACTTCGCGATTCATACATCACAACCCTCAATGTCCTGCAAGCCTACACATTGAAGCGAATTCGTGATCCTGACTACCATGTGAAGTTGAGGCCACATTTGTCCAAAGACTACATGGAATCAAACAAGCCAGCAGCTGAGCTTGTGAAACTCAACCCTACAAGTGATTATGCTCCTGGTCTGGAGGATACCCTTATTTTGACAATGAAGGGTATTGCTGCTGGCATGCAAAACACTGGTTAA
Predicted protein sequences of Glyma06g43050
>Glyma06g43050.1   sequence type=predicted peptide   gene model=Glyma06g43050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTRNFEKMASIDAQLRLLAPSKVSDDDKLVEYDALLLDRFLDILQDLHGDDIRETVQDCYELSAEYEGQNNPQKLEELGNMLTGLDAGDSIVISKSFAHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKRLVNQLKKTPQEIFDALKSQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGIPKFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRVRSDELLSSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGSSEIPEETTFTNVEQFLEPLELCYRSLCACGDQPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITNHLEIGSYREWSEERRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPSDSFGAYIISMATAPSDVLSVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRDRINGKQEVMIGYSDSGKDAGRFSAAWALYKAQEELIKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVAPKPEWRALMDEMAVIATEEYRSIVFQEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFSHVIKKDPKNLQMLQDMYNQWPFFRVSLDLVEMVFAKGDPGIAALYDKLLVSEELWPFGERLRSMFEETKSLLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYMESNKPAAELVKLNPTSDYAPGLEDTLILTMKGIAAGMQNTG*






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