SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53310 | AT | Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase 1 | chr1:19884261-19888070 REVERSE LENGTH=967 | SoyBase | E_val: 0 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006099 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009749 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0015977 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbon fixation | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0051262 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein tetramerization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008964 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxylase activity | SoyBase | N/A | ISS |
| PF00311 | PFAM | Phosphoenolpyruvate carboxylase | JGI | ISS | |
| UniRef100_B0LXE5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxylase n=1 Tax=Arachis hypogaea RepID=B0LXE5_ARAHY | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KEN4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEN4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g43050 not represented in the dataset |
Glyma06g43050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g277500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g43050.1 sequence type=CDS gene model=Glyma06g43050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTACACGGAACTTTGAGAAAATGGCTTCTATTGATGCTCAGTTGAGGTTGCTAGCACCAAGTAAGGTTTCTGATGATGACAAGCTTGTTGAATATGATGCTTTGTTGCTGGACCGTTTCCTTGACATTCTTCAGGATTTGCATGGCGATGATATTAGAGAAACGGTTCAAGACTGTTATGAGCTGTCTGCTGAGTATGAAGGGCAGAATAATCCTCAGAAGTTGGAGGAACTTGGGAACATGCTAACTGGTCTTGATGCTGGGGATTCTATTGTGATTTCCAAGTCGTTTGCTCATATGCTTAATTTGGCAAATTTGGCAGAAGAAGTTCAGATTGCCTACCGTAGAAGGATTAAGTTATTGAAGAAGGGTGATTTTGCTGATGAGAATTCTGCTATCACTGAGTCAGATATTGAAGAGACTTTCAAGAGGCTTGTGAATCAACTGAAGAAGACACCTCAAGAAATCTTTGATGCTTTGAAGAGTCAAACTGTAGATTTGGTCTTAACTGCTCATCCTACTCAGTCTGTTCGTAGATCTTTGCTGCAAAAGCATGGCAGGATAAGGAATTGTTTGACACAGTTGTATGCTAAAGACATAACACCGGACGATAAACAGGAGCTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGTACGGATGAAATTCGAAGGACCCCTCCTACACCACAAGATGAGATGAGAGCAGGAATGAGCTACTTTCACGAGACGATCTGGAAAGGCATACCAAAATTTTTGCGCCGGGTTGACACTGCTCTGAAGAACATTGGCATAAATGAACGTGTTCCATATAATGCCCCTGTTATTCAATTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAACCCCAGGGTAACTCCAGAAGTTACAAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATTTGTACTTCTCTCAGATTGAGGATCTCATGTTTGAGTTGTCTATGTGGCGCTGCAATGATGAGCTACGTGTTCGTTCTGATGAACTCCTTAGCTCCTCAAAGAGAGATGCAAAACATTATATTGAGTTTTGGAAACAGATTCCTCCCAATGAGCCGTATCGTGTTATTCTCGGTGATGTAAGGGACAAATTATATAATACACGTGAACGTGCTCGGCAGTTGTTAGCCAATGGAAGCTCTGAAATCCCTGAGGAGACTACCTTCACAAATGTTGAACAGTTCCTGGAGCCTCTTGAATTATGTTATAGATCGCTGTGTGCATGTGGTGACCAACCAATAGCTGATGGAAGCCTTCTTGATTTCTTGCGCCAAGTTTCCACATTTGGGCTTTCACTTGTAAGACTTGATATCCGTCAAGAATCAGATCGGCACACTGATGTTATGGATGCTATTACAAACCACTTAGAGATTGGATCTTATCGAGAGTGGTCTGAGGAACGCAGGCAGGAATGGCTGCTATCCGAGCTCAGTGGAAAGCGCCCTCTCTTTGGTCCTGATCTTCCTAAAACAGAAGAAATTGCTGATGTATTGGAAACCTTCCATGTCATTGCGGAACTTCCTTCAGACAGCTTTGGTGCCTATATCATCTCAATGGCAACAGCTCCATCTGATGTGCTTTCTGTAGAACTTTTACAACGTGAATGTCATGTGAAGCAGCCATTAAGGGTTGTTCCATTGTTTGAAAAACTTGCTGATCTTGAGGCTGCTCCTGCTGCGGTAGCCCGCCTATTCTCTATAGATTGGTACAGAGACCGTATCAATGGGAAACAAGAAGTTATGATAGGGTACTCGGACTCGGGAAAAGATGCTGGTCGTTTCTCTGCAGCATGGGCACTATACAAGGCTCAAGAAGAGCTCATAAAGGTTGCAAAAGAGTTTGGTGTTAAGCTCACAATGTTCCATGGCAGAGGAGGAACTGTGGGAAGAGGAGGAGGTCCCACTCATCTTGCTATATTATCTCAGCCACCGGATACTATTCATGGCTCACTTCGGGTAACAGTGCAAGGTGAAGTTATTGAACAGTCATTTGGAGAGGAGCACTTGTGCTTCAGAACACTTCAGCGCTTCACTGCTGCTACACTTGAGCATGGAATGCACCCTCCTGTGGCACCAAAACCAGAGTGGCGTGCCCTCATGGATGAGATGGCTGTCATTGCTACAGAGGAGTATCGCTCCATTGTTTTCCAGGAACCCCGTTTCGTTGAGTACTTCCGATGTGCTACACCTGAGCTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCGTCAAAACGAAAGCCAAGTGGAGGAATTGAATCACTTCGTGCAATCCCTTGGATCTTTGCTTGGACTCAGACTAGGTTTCATCTACCTGTATGGCTTGGCTTTGGGGCAGCATTTAGCCATGTTATTAAGAAGGATCCAAAGAATCTCCAAATGCTTCAAGATATGTATAATCAATGGCCTTTCTTCAGGGTCAGCCTTGACTTGGTTGAGATGGTGTTCGCCAAGGGAGACCCTGGGATTGCGGCTCTTTATGACAAACTCCTAGTGTCAGAGGAACTGTGGCCATTTGGCGAGCGATTAAGGTCTATGTTTGAAGAAACCAAGAGCCTTCTCCTCCAGGTTGCTGGACACAAAGATCTCCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGACTTCGCGATTCATACATCACAACCCTCAATGTCCTGCAAGCCTACACATTGAAGCGAATTCGTGATCCTGACTACCATGTGAAGTTGAGGCCACATTTGTCCAAAGACTACATGGAATCAAACAAGCCAGCAGCTGAGCTTGTGAAACTCAACCCTACAAGTGATTATGCTCCTGGTCTGGAGGATACCCTTATTTTGACAATGAAGGGTATTGCTGCTGGCATGCAAAACACTGGTTAA
>Glyma06g43050.1 sequence type=predicted peptide gene model=Glyma06g43050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTRNFEKMASIDAQLRLLAPSKVSDDDKLVEYDALLLDRFLDILQDLHGDDIRETVQDCYELSAEYEGQNNPQKLEELGNMLTGLDAGDSIVISKSFAHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKRLVNQLKKTPQEIFDALKSQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGIPKFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRVRSDELLSSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGSSEIPEETTFTNVEQFLEPLELCYRSLCACGDQPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITNHLEIGSYREWSEERRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPSDSFGAYIISMATAPSDVLSVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRDRINGKQEVMIGYSDSGKDAGRFSAAWALYKAQEELIKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVAPKPEWRALMDEMAVIATEEYRSIVFQEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFSHVIKKDPKNLQMLQDMYNQWPFFRVSLDLVEMVFAKGDPGIAALYDKLLVSEELWPFGERLRSMFEETKSLLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYMESNKPAAELVKLNPTSDYAPGLEDTLILTMKGIAAGMQNTG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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