Glyma06g43000 - SoyBase

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Report for Sequence Feature Glyma06g43000

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46283492
stop:	46285612
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g43000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42620	AT	Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein \| chr2:17756170-17758251 FORWARD LENGTH=693	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007568	GO-bp	Annotation by Michelle Graham. GO Biological Process: aging	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0009934	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization	SoyBase	N/A	ISS
GO:0010016	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot morphogenesis	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0019005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
KOG1947	KOG	Leucine rich repeat proteins, some proteins contain F-box	JGI		ISS
PTHR23125	Panther	F-BOX/LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR23125:SF211	Panther		JGI		ISS
UniRef100_I1KEN0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KEN0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q208P4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RAMOSUS4 n=1 Tax=Pisum sativum RepID=Q208P4_PEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g43000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g43000

Paralog	Evidence	Comments
Glyma12g15360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g43000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g277000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g43000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g43000

Limit To All Plant Sequences

>Glyma06g43000.1   sequence type=CDS   gene model=Glyma06g43000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATTCTGTTTGAACGTGTTCGCGGCGGTTTCCGACACCCGCACGCGGAACGCGTTGTCGTTGGTATCGTGGAGCTTCTACCGGTTGGAGCGCAAGACGCGCACATCTCTCACGCTCCGCGGCAACGCGCGTGACCTCCACCTCATCCCGACCTCCTTCAAGCACGTCACGCACCTCGACCTCTCCTTCCTCTCGCCGTGGGGCCACGCGCTCTTCTGCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGTCGACCACCAGCGACACCTCGCGCAACATCTCCGCGCCGCGTTCCCGCGCGTCACCTCACTCGCCGTCTACGCGCGTGACCCGGACACTCTCCGCCTCCTCCTCCTCTCCCCATGGCCGGAGCTCTCCGCCGTCAAGCTCGTCCGGTGGCACCAGCGCCCGCCGACCTCCGCGAACGAAGCCGACTTCGCTGAGCTCTTCAAGAAGTGCCGATCGCTCGCCTCCCTCGACCTCTCCTCCTACTACCACTGGACGGAGGACATCCCGACGGTGCTCGCCGCAAACCCTATCTCCGCCGCCTTTCTCCGCCGCCTCAACCTCCTAACAACCTCCTTAACAGAAGGATTCAAGTCTCACGAAATCGAATCGATCACCGCGTCGTGCCCTAACCTGGAGCACTTTCTCGCGGTCTGCAACTTCGATCGGAGATATATAGGGTCCGTCAGCGACGACACGCTGGTTTCTATTGCTTCCAATTGCCCAAAGCTATCGTTGCTTCACTTGGCCGATACGTCGTCGTTTTCAAGTCGCAGAGAGGAGGACGAGGGTTTCGACGGAGAAGACGCTAGCATTAGCCGCGCTGCTCTTATGACTTTGTTCTCTGGACTTCCTCTTTTGGAAGAGCTCGTGTTAGATGTTTGTAAAAATGTCAGAGAGAGTAGTTTCGCTTTTGAAGTGGTGGGTTCAAAGTGCCCTAATTTGAGGGTTCTAAAATTGGGACAGTTTCAAGGGATTTGCTTGGCCTTTGAGTCTCGGCTTGACGGAATTGCCCTTTGCCACGGGCTTCAATCGTTGTCTGTTGGTAACTGCGCGGACCTTGATGACATGGGGTTAATTGAGATTGCCAGGGGGTGTTCGAGACTGGTTAGATTTGAGCTTCAGGGTTGCAGGCTTGTGACGGAGCGTGGACTGAGGACCATGGCTTGTTTGCTTGGCAGGACTCTGATTGATGTCAGGGTTTCTTGCTGCGTAAACCTTGACACAGCTGCGACTCTCAGGGCTTTGGAGCCAATTCGCGAGCAGATTGAGCGGCTCCATGTGGATTGTGTGTGGAATGGGTTGAAGGAGAGTGATGGCCTGGGACATGGGTTTCTTAGTTTTGATTTGAATGGTTTGGATGAACAGGATGATGTGGGTAAACTCATGGATTACTACTTTGGGGGTGGAGAATGTGAGAACACAAGCAAAAGGAAGAGGCAGAGATGCGAGTATCAAATGAGGGTTCATGATTCCTTTTTGGAAAGCAATGGCAATGGTTTCTATGGCAAGAGCTGGGACAAGCTGCAGTATCTTTCTCTCTGGATAAAAGTTGGTGATCTCTTGACTCCATTGCCGGTGGCAGGGTTGGAAGATTGTCCCGTCTTGGAAGAGATTCGGATTAAGGTTGAAGGAGATTGTAGGGGGCAGCCAAAGCCAGCAGAGAGCGAATTTGGTCTCAGCATTCTGGCTTGTTATCCTCAGCTATTGAAGATGCAGCTGGACTGTGGTGATACTAAAGGTTATGCTCTCACGGCACCCTCTGGGCAAATGGATTTGAGCCTGTGGGAGAGGTTTCTTCTGAATGGCATTGGCAGTTTGAGTCTCAGTGAGCTTCATTACTGGCCACCACAAGATGAGGATGTGAACCAGAGGAGTGTGTCACTTCCAGCTGCTGGCTTGCTACAAGAATGTTACACTTTGAGAAAGCTCTTCATTCACGGAACAGCACATGAACATTTCATGAACTTTTTTCTTAAGATACAAAACCTTAGGGATGTACAGCTGAGAGAAGATTATTATCCAGCTCCTGAAAATGACATGAGTACAGAGATGAGGGTAGGTTCGTGCAGCCGCTTTGAAGATGCACTGAATAGGCGTCGAATATGTGATTGA

Predicted protein sequences of Glyma06g43000

Limit To All Plant Sequences

>Glyma06g43000.1   sequence type=predicted peptide   gene model=Glyma06g43000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RFCLNVFAAVSDTRTRNALSLVSWSFYRLERKTRTSLTLRGNARDLHLIPTSFKHVTHLDLSFLSPWGHALFCSSSSSAAAAAVDHQRHLAQHLRAAFPRVTSLAVYARDPDTLRLLLLSPWPELSAVKLVRWHQRPPTSANEADFAELFKKCRSLASLDLSSYYHWTEDIPTVLAANPISAAFLRRLNLLTTSLTEGFKSHEIESITASCPNLEHFLAVCNFDRRYIGSVSDDTLVSIASNCPKLSLLHLADTSSFSSRREEDEGFDGEDASISRAALMTLFSGLPLLEELVLDVCKNVRESSFAFEVVGSKCPNLRVLKLGQFQGICLAFESRLDGIALCHGLQSLSVGNCADLDDMGLIEIARGCSRLVRFELQGCRLVTERGLRTMACLLGRTLIDVRVSCCVNLDTAATLRALEPIREQIERLHVDCVWNGLKESDGLGHGFLSFDLNGLDEQDDVGKLMDYYFGGGECENTSKRKRQRCEYQMRVHDSFLESNGNGFYGKSWDKLQYLSLWIKVGDLLTPLPVAGLEDCPVLEEIRIKVEGDCRGQPKPAESEFGLSILACYPQLLKMQLDCGDTKGYALTAPSGQMDLSLWERFLLNGIGSLSLSELHYWPPQDEDVNQRSVSLPAAGLLQECYTLRKLFIHGTAHEHFMNFFLKIQNLRDVQLREDYYPAPENDMSTEMRVGSCSRFEDALNRRRICD*

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