Glyma06g42980 - SoyBase

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Report for Sequence Feature Glyma06g42980

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46263333
stop:	46268052
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g42980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30990	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF688) \| chr2:13187776-13189761 REVERSE LENGTH=593	SoyBase	E_val: 1.00E-55	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05097	PFAM	Protein of unknown function (DUF688)	JGI		ISS
UniRef100_B9DH03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT2G30990 protein n=1 Tax=Arabidopsis thaliana RepID=B9DH03_ARATH	SoyBase	E_val: 6.00E-53	ISS
UniRef100_I1KEM8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEM8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g42980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g42980

Paralog	Evidence	Comments
Glyma12g15390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g42980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g276800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g42980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g42980

Limit To All Plant Sequences

>Glyma06g42980.1   sequence type=CDS   gene model=Glyma06g42980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATACTAAAAACTCAAATGGAAGAAAAGCAGTTAGATTTTAATCAGCCTCTTTTATCGGTAAGGCGAATCTCATCAACGGCGGCCTCTGAAAATGACAATAAAAGAAAAGCTGATAAATCAGTGCGGAAACGACCTCCTCTTCCGTTTTACAAATCAGAGTTAAAATCAGGTCCAGTGACTAACCCTGGAACTGTTCCTTTTGTATGGGAGAAGACTCCTGGAAGACCTAAGAATGAAAGCAAACTACAAACAAGGGCTGTCGAACGGCCTTCCGTTGCTCCAAAGCTTCCACCCGGGAGGGTTTTGAAAGTTGAACAGCAATGTTCTGATAAAGTTCCTAAAGGTGCATCAGTTACTCAATCCAGAACAGGAAGCAGTGTTTCAGATTCTCCGCGTACTGCATCTCTAGATAATAAAGTGACAAAACATGAAAGCCCCCAAGAAGTAATTGAGGAAAAGGAAAGTTCTGGTTCAGATGATGAGGATGAGAACTATCTAGATGCTCTTGATACACTTTCTAGAACTGAATCATTCTTCATGAGCTGTAGTGTGAGTGGTTTGAGTGAATGGGATGATCAAGAGGTCCAACTATCAGGAAATTTTTCAACAGATCAACAGGCACGTGATTTCATGATTGGCAGGTTCTTGCCTGCAGCAAAGGCAATGGCTTCTGAAACACCTCAAATTCAGCACAACTCTAGGAAGCCACTTGTTACACAAGAACAACCAAAACAGGCATGGAAGGTAGTTAGTGGAGCGAATTCCCGTCCCCTTAATCCAAAATGGCAAAAGGTTTTGCCGCATTATGCTCAAGATATTGGTAGGGAAGAGAGCGAAGATGAAAGTGATGATAATGATGGATATGAAAACAATGCACCCAAAGTTTGTGGGCTATTTCCTCGGTTCTGCCTTTTGAATCCAGTTCCAGGATTAAGAATGGAGGGTAGGATTCGAAGTTCTACATTTCATGGAGTGCAGAGTAAATCAATTACTTCTCACAGAAGAACTGCAAAAGAGCATGGTAGAACTGCTACTAATGGGAAAAAGTCAGTAAACTCCCAGTCTGGTTATACAGAAGAGAGAGATTTTCTGAGTACTGCAGAAAAATCTAAGCATGATATTGATCCACATCGTAGAGCTTGCAGCAAATCATCAGCCTCTGAGAGCACCGAATTTGAATCAAGTTGTGATAGCCCTGTTGTTGAGAAAACTCTATATGTAGATTCTGTACATAAGGTCAAATCTTCAGACACCAATATCAGAGGGGATGATTTTGATACTCTAAGAAAAGACACTGACCTTGATAAAAGCCTTTCTATAGATTCTTCAATTGAGGATAGCAAACCCTTGGGTATTGTGGATGAGAAGGAAGTATCAGAACCTAAAAGTTCAGCTTCTCTTGATTCATCTCTCCCCGTTTGTTCTGATAATTCAAATGACAATATGCAAATGGAAATGAAAAATCATTCCAACAAAATATGCCCAGAAAAGCAAGAGTTGACAAAGCCTGATTACCAAGGAAGTAACTTAGATCGCGATTTGGTTGCAATCTCAAGTCCAGATATGGTTGCATGCAAGAAAATAGAGTCTGAAAGCAAAGATTTTAGCACTAAGGAAAGTTCTAATGGCCTAATTAAGAATCCTGTTTCAATGAGAAACAGGAAATTTGCCAGTGATGTGAAATTTGATTCAAAGTGCCAACAAGCTACCAAAGTGGTTGATCAAGAATGCACTCTTGGATCTAGTGAGGATCCTAGTAATTTGGCTAGCTCAAAGGTGGTGGGTGACACAAAGATCAACTTAGAAAGTCAATTGCGGATGAAGTTGAGCCATGGAAAGACTTCAAATGCAAGCTCTTCAAAGCTTCCTCTTGCCCTTCCTTCACCAAAAGCTCCTTCAGAGTCTTGGCTTAAGCGCACATTACCAACAGTTCCCTCGAAGAGTATATCTTTACGGTCTAATCTTGCTACCTACTTCCATGCACCTGTTAAAACTTCTGAAGTTAATCATGGGCATCTTCAGTTTGCTCAGGAACTACTCCCACCCATTCCAGAAGCATGA

Predicted protein sequences of Glyma06g42980

Limit To All Plant Sequences

>Glyma06g42980.1   sequence type=predicted peptide   gene model=Glyma06g42980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILKTQMEEKQLDFNQPLLSVRRISSTAASENDNKRKADKSVRKRPPLPFYKSELKSGPVTNPGTVPFVWEKTPGRPKNESKLQTRAVERPSVAPKLPPGRVLKVEQQCSDKVPKGASVTQSRTGSSVSDSPRTASLDNKVTKHESPQEVIEEKESSGSDDEDENYLDALDTLSRTESFFMSCSVSGLSEWDDQEVQLSGNFSTDQQARDFMIGRFLPAAKAMASETPQIQHNSRKPLVTQEQPKQAWKVVSGANSRPLNPKWQKVLPHYAQDIGREESEDESDDNDGYENNAPKVCGLFPRFCLLNPVPGLRMEGRIRSSTFHGVQSKSITSHRRTAKEHGRTATNGKKSVNSQSGYTEERDFLSTAEKSKHDIDPHRRACSKSSASESTEFESSCDSPVVEKTLYVDSVHKVKSSDTNIRGDDFDTLRKDTDLDKSLSIDSSIEDSKPLGIVDEKEVSEPKSSASLDSSLPVCSDNSNDNMQMEMKNHSNKICPEKQELTKPDYQGSNLDRDLVAISSPDMVACKKIESESKDFSTKESSNGLIKNPVSMRNRKFASDVKFDSKCQQATKVVDQECTLGSSEDPSNLASSKVVGDTKINLESQLRMKLSHGKTSNASSSKLPLALPSPKAPSESWLKRTLPTVPSKSISLRSNLATYFHAPVKTSEVNHGHLQFAQELLPPIPEA*

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