Glyma06g42860 - SoyBase

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Report for Sequence Feature Glyma06g42860

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46163094
stop:	46171713
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g42860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42710	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L1p/L10e family \| chr2:17782352-17784830 FORWARD LENGTH=415	SoyBase	E_val: 6.00E-125	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1570	KOG	60S ribosomal protein L10A	JGI		ISS
PTHR23105	Panther	60S RIBOSOMAL PROTEIN L10A - RELATED	JGI		ISS
PTHR23105:SF5	Panther	50S RIBOSOMAL PROTEIN L1P	JGI		ISS
PF00687	PFAM	Ribosomal protein L1p/L10e family	JGI		ISS
UniRef100_G7JCN1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L1 n=1 Tax=Medicago truncatula RepID=G7JCN1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KEL8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEL8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g42860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g42860

Paralog	Evidence	Comments
Glyma12g15450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g42860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g276000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g42860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g42860

Limit To All Plant Sequences

>Glyma06g42860.1   sequence type=CDS   gene model=Glyma06g42860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCACTGAAGCTTCTCCTCTCCCAAGCTCGCCGCCATTCCCTCCCCAAATGCGCTTTCTCTATGACCTCTCACAGATCCCTCTGTGCTTCTTCGGAATCAAACTCAAACCCTCCCCGAAGACCCTTCGAACCCATCCCCATCCAACCCGTCTCCTACCCCGTCAAGCCCAAACCCGCACCACCCGAACCTCAACCTTCACCCGAACCTCAATCACAATCCCTCCCCCCTTCCTCGCCGGACTCGCAACGCGCTTGGACGCGCGAGGACATCCGCTACGTGAAGGACGTGCCGTCGATCGCGCCGGTGGCGTACGCCTCGCGCGGCGGCGTGGCGCCTCTCCCCGATGACAGAGCTCCCGTGGAGGACGCGGCAGAGAGCGAGAGGAGGATGATCGAGGCGGAGAATGAAATGAGGTTGCGAATGGCCAAGGCCGTCGAAGAGGAAAGAATGAAGGTGCCGTTTCCGCTGCTGATTAAGCCCAAGAAGAACGAGAAGCCTCCTCCGCTTGATTTGAACGAAGCCATTCGCCAAGTTAAGGCCAATGCCAAGGCAAAGTTTGATGAAACTGTTGAAGCACATATAAGATTGGGTGTTGATTCAAAGCGAACAGAAATGGCAGTTCGTGGTACTGTGATTCTGCCTCATGGTGCTCCAAAGGCTGTCAGTGTGGCTGTTTTTGCAGAAGGGGCTGAGGCAGAGGAAGCGAAAGCTGCAGGAGCTGATATAGTTGGTGGTAAAGAGCTTATTGAGGAGATTGCTAGCGGTAAAAATAAGCTCAAAGTTGACAAATGCTTCTCAACTCCTGGAATGGCACCTAATCTTGGAAAGATAGCACAATATCTTAGAAAGCGAAGACTGATGCCAGATAAGAAACTAGGTACTCTTACTAGTGATATTGCTGGGCAGTTGAAAGAGCTAAGACAAGGCCGTGTAGAGTTTAAAATGGAAAGTAAATCAATTTTGCATGTGGGACTTGGAAAGGTAAGCTACAAAGAAGAGGCTTTACGGGAGAATATTAGTGCATTTATGAATGCTGTATTGCTTGCAAAGCCTGCTGGCTTAAAAAAGACTTCCAAATATGCTGGGTATGTGTTGTCTGTCCATATAAGCAGCACGATGGGCCCAGGATTACCTGTATCTATACAATCAATATCCAAAGCAGCAGATAACTACAAGAAAATGCATATGGTTTGA

Predicted protein sequences of Glyma06g42860

Limit To All Plant Sequences

>Glyma06g42860.1   sequence type=predicted peptide   gene model=Glyma06g42860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALKLLLSQARRHSLPKCAFSMTSHRSLCASSESNSNPPRRPFEPIPIQPVSYPVKPKPAPPEPQPSPEPQSQSLPPSSPDSQRAWTREDIRYVKDVPSIAPVAYASRGGVAPLPDDRAPVEDAAESERRMIEAENEMRLRMAKAVEEERMKVPFPLLIKPKKNEKPPPLDLNEAIRQVKANAKAKFDETVEAHIRLGVDSKRTEMAVRGTVILPHGAPKAVSVAVFAEGAEAEEAKAAGADIVGGKELIEEIASGKNKLKVDKCFSTPGMAPNLGKIAQYLRKRRLMPDKKLGTLTSDIAGQLKELRQGRVEFKMESKSILHVGLGKVSYKEEALRENISAFMNAVLLAKPAGLKKTSKYAGYVLSVHISSTMGPGLPVSIQSISKAADNYKKMHMV*

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