SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30970 | AT | Annotation by Michelle Graham. TAIR10: aspartate aminotransferase 1 | chr2:13179012-13181686 FORWARD LENGTH=430 | SoyBase | E_val: 0 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004069 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-aspartate:2-oxoglutarate aminotransferase activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0008483 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transaminase activity | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG1411 | KOG | Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 | JGI | ISS | |
| PTHR11879 | Panther | ASPARTATE AMINOTRANSFERASE | JGI | ISS | |
| PF00155 | PFAM | Aminotransferase class I and II | JGI | ISS | |
| UniRef100_Q42803 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aspartate aminotransferase n=1 Tax=Glycine max RepID=Q42803_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00019D3467 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00019D3467 related cluster n=1 Tax=unknown RepID=UPI00019D3467 | SoyBase | E_val: 0 | ISS |
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Glyma06g42830 not represented in the dataset |
Glyma06g42830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g15480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g275700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g42830.1 sequence type=CDS gene model=Glyma06g42830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGATTCGCAACTCGCTCACCGGCCAATTCCTCCGCCGCAGCTCCGTCGCCGGAGCAAGGCTCATGTCTTCTTCGTCCTCATGGTTCCGGAGCATCGAGCCCGCTCCCAAGGATCCTATCCTCGGAGTCACTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCATGGAGTATCTTCCCATGGGTGGAAGCATAAAAATGATAGAAGAATCGCTGAAGCTGGCATTTGGAGACAACTCTGAGTTCATCAAGGATAAAAGAATAGCTGCAGTGCAGGCTTTATCTGGGACTGGTGCATGTCGACTTTTTGCTGCATTTCAACAGAGATTTCATCCTAATACCCAAATCTATATACCAGTGCCTACCTGGGCCAACCACCATAACATTTGGAGAGATGCTGGAGTGCCTATGAAGACATTCCGTTACTATCACCCTGAGTCTAGAGGATTGGATTTTTCAGGACTGATGGATGACATAAAGAATGCTCCAGATGGTTCCTTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGAGTAGATCCTTCAGAAGAACAATGGAGAGAGATCTCTTCCCAGATAAAGGCTAAGGGTCATTTCCCTTTCTTTGACATGGCATATCAAGGTTTTGCTAGTGGTGATCCAGAGAGAGATGCAAAAGCCATAAAGATTTTTCTTGAGGATGGTCATTTAATAGGACTTGCTCAGTCATATGCAAAAAATATGGGACTGTATGGCCAGCGAGCAGGAAGCCTGAGTGTGCTTTGTGAAGATGAGAAACAAGCTGTGGCTGTAAAAAGTCAGTTGCAGCTGATTGCTAGACCCATGTACAGTAACCCACCTCTCCATGGAGCACTTATAGTTTCTACTGTCCTTGGTGATCCAGATTTGAAGAAGTTATGGCTTAAAGAAGTCAAGGTTATGGCAGACCGCATCATCGGAATGAGGACTACACTACGAGAAAACTTAGAAAAGAAGGGGTCTACTTTGCCATGGCAGCATATAACTAATCAGATTGGTATGTTCTGCTACAGTGGATTGACACCTGAACAGGTTGATCGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCATGAGGTTACAAAATCATTCTAG
>Glyma06g42830.1 sequence type=predicted peptide gene model=Glyma06g42830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIRNSLTGQFLRRSSVAGARLMSSSSSWFRSIEPAPKDPILGVTEAFLADQSPNKVNVGVGAYRDDHGKPVVLECVREAERRVAGSQFMEYLPMGGSIKMIEESLKLAFGDNSEFIKDKRIAAVQALSGTGACRLFAAFQQRFHPNTQIYIPVPTWANHHNIWRDAGVPMKTFRYYHPESRGLDFSGLMDDIKNAPDGSFFLLHACAHNPTGVDPSEEQWREISSQIKAKGHFPFFDMAYQGFASGDPERDAKAIKIFLEDGHLIGLAQSYAKNMGLYGQRAGSLSVLCEDEKQAVAVKSQLQLIARPMYSNPPLHGALIVSTVLGDPDLKKLWLKEVKVMADRIIGMRTTLRENLEKKGSTLPWQHITNQIGMFCYSGLTPEQVDRMTNEFHIYMTRNGRISMAGLNTGNVGYVADAIHEVTKSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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