Glyma06g42820 - SoyBase

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Report for Sequence Feature Glyma06g42820

Feature Type:	gene_model
Chromosome:	Gm06
Start:	46120492
stop:	46125656
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g42820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06410	AT	Annotation by Michelle Graham. TAIR10: trehalose-phosphatase/synthase 7 \| chr1:1955413-1958153 FORWARD LENGTH=851	SoyBase	E_val: 0	ISS
GO:0005992	GO-bp	Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process	SoyBase	N/A	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004805	GO-mf	Annotation by Michelle Graham. GO Molecular Function: trehalose-phosphatase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG1050	KOG	Trehalose-6-phosphate synthase component TPS1 and related subunits	JGI		ISS
PTHR10788	Panther	TREHALOSE-6-PHOSPHATE SYNTHASE	JGI		ISS
PF00982	PFAM	Glycosyltransferase family 20	JGI		ISS
PF02358	PFAM	Trehalose-phosphatase	JGI		ISS
UniRef100_G7JCN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trehalose synthase-like protein n=1 Tax=Medicago truncatula RepID=G7JCN5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KEL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEL5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g42820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g42820

Paralog	Evidence	Comments
Glyma12g15500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g42820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g275600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g42820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g42820

Limit To All Plant Sequences

>Glyma06g42820.1   sequence type=CDS   gene model=Glyma06g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCCAGGTCGTATACGAATCTTTTAGATTTGGCCTCCGGGAATTTCCCGGCAATGGGGGGGAGGGAGACTAGGGAGCGGAGGCGGCTGCCGAGGGTTATGAGTGTCCCGGGGTTTATCACTGAGGTAGATGATGATCAGGCAGTTAGTGTTTCCTCTGATAATCCGTCGACTGTTACTACAGATAGAATGATCATTGTGGCTAACCAGCTACCGTTGAAGGCAAAGCGAAAAGAGGACAACAAAGGGTGGAGTTTCAGTTGGAATGAGGACTCGTTGCTTTTACAGCTCAAGGATGGACTTCCGGATGACATGGAGGTTCTTTATGTTGGTTCGCTACGTGTTGACATTGATCCAGCTGAACAGGATGACGTATCACAGTATTTATTGGATAAATTCAAATGTGTGCCAACTTTTCTACCCGCTGATGTCTTGGCAAAATTTTATGATGGCTTCTGTAAACGGCAGTTATGGCCACTTTTTCATTACATGCTACCATTTTCAACAGATAAAAGCCACCGATTTGATCGCTCTTTATGGGAAGCTTACGTGCTGGCAAACAAGCTATTTTTTCAGAAGGTAGTTGAAATAATAAACCCAGAGGATGATTACATTTGGATTCATGATTATCATTTGATGGTGCTACCAACTTTTATAAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCATCGTCAGAGATATATAGGACTCTTCCAGTCAGGGAAGAGATACTGAAAGCTTTACTAAACTCTGATATCATCGGATTCCATACCTTTGACTATGCTCGTCATTTCCTTTCCTGTTGCAGTCGTATGTTGGGTCTGGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAGTACTATGGAAGGACAATCAGTATTAAGATTATGCCTGTTGGGATTCACATGGGTCGGATTGAGTCAGTCATGAGAATGGCAGATGAGGAATGCAAGGTAAAGGAGCTCAAACAACAATTCGAAGGAAAAACCATCTTGCTTGGTATTGATGATATGGACATTTTCAAAGGCATAAATTTGAAGATTTTGGCTATGGAGCAGATGCTCAGACAACATCCCAAATGGCAAGGAAGAGCTATTCTGGTCCAGATAGTTAATCCTGCTAGAGGTAAAGGGATACATCTGGAGGAGATACATGCTGAAATACAAGAAAGCTGCAACAGGATCAACAGAGTGTTTGGGAGACCTGGTTACGAACCTATTGTTTTTATTGATAGAGCAGTTCCTATTGCTGAAAAAGTTGCCTATCACAGCATGGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGAATGAACCTAACTCCTTATGAATATATTGCATGTAGACAGGGAATATCTGGTTCTGAATCATGTTCCAATGTCAGTGACCCAAAGAAGAGTATGCTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTAAGTGGGGCAATCCGTGTTAATCCATGGAATGTTGAAGCAACTTCAGAGGCAATGAATGAGGCCATCTCAATGAGTGATGGAGAGAAACAGTTGCGGCATGAGAAGCATTACCGGTATGTCAGCACTCATGATGTGGCTTATTGGTCACGTAGTTTCTTGCAAGACATGGAGCGGGCTTGCACTGACCTTCTAAGGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAATTTTAAAAAGCTCTCAATTGATGCAATGGTTTCAGCTTACAAGAGGGCAAAGAATAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAAAACTCCATTAATAAGAGTCCAAGCAAGGAGGTCTTGTCTATTTTAGAATCACTTAGTGCAGACCCCAAAAATGTTGTTTTCATTGTTAGTGGACGGGGGAGGAATAGCTTAAGTGACTGGTTTGATTCCTGTGAAAAACTTGGAATTGCTGCAGAACATGGGTACTTCTTGAGATGGTCTCACGGTGGAGAATGGGAAAACTGTGGTAAGAGCTCCGACTTTGGATGGATGCAGATTGCTGAACCTGTAATGAAACAATATACAGAGGCGACTGATGGCTCCTCAATTGAAAGAAAAGAAAGTGCTTTGGTCTGGCAATACCGTGATGCAGACCTTGGTTTTGGATCTGCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTCTGGCCAATGAGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAGGATGTGAGCAAAGGCTTGGTCGCCGAGAAGATATTTTCGTCAATGCACAGGAAGGGCAAACAGGCCGACTTTGTGCTGTGTGTTGGCGATGACAGATCAGATGAGGACATGTTTGAGATAGTTAGTAGTGCCATCTCAAGGAATATTCTTGCCTCCAATGCTTCTGTGTTTGCTTGCACTGTTGGACAAAAACCAAGCAAAGCAAAGTATTATCTGGATGATACAACTGAGGTAACAAGCATGTTGGAATCTTTGGCTGAAGAATCAGATGCTTCACCCTGCATAGAAGAAACTGGGGATTCCTCTTGGAGGCCAGTGTGA

Predicted protein sequences of Glyma06g42820

Limit To All Plant Sequences

>Glyma06g42820.1   sequence type=predicted peptide   gene model=Glyma06g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSRSYTNLLDLASGNFPAMGGRETRERRRLPRVMSVPGFITEVDDDQAVSVSSDNPSTVTTDRMIIVANQLPLKAKRKEDNKGWSFSWNEDSLLLQLKDGLPDDMEVLYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPADVLAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRSLWEAYVLANKLFFQKVVEIINPEDDYIWIHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRMADEECKVKELKQQFEGKTILLGIDDMDIFKGINLKILAMEQMLRQHPKWQGRAILVQIVNPARGKGIHLEEIHAEIQESCNRINRVFGRPGYEPIVFIDRAVPIAEKVAYHSMAECVIVTAVRDGMNLTPYEYIACRQGISGSESCSNVSDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATSEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRAKNRAILLDYDGTVMPQNSINKSPSKEVLSILESLSADPKNVVFIVSGRGRNSLSDWFDSCEKLGIAAEHGYFLRWSHGGEWENCGKSSDFGWMQIAEPVMKQYTEATDGSSIERKESALVWQYRDADLGFGSAQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAEKIFSSMHRKGKQADFVLCVGDDRSDEDMFEIVSSAISRNILASNASVFACTVGQKPSKAKYYLDDTTEVTSMLESLAEESDASPCIEETGDSSWRPV*

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