SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G36930 | AT | Annotation by Michelle Graham. TAIR10: Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191 | SoyBase | E_val: 1.00E-46 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
| PTHR11017 | Panther | LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR11017:SF20 | Panther | DISEASE RESISTANCE PROTEIN | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF00931 | PFAM | NB-ARC domain | JGI | ISS | |
| PF01582 | PFAM | TIR domain | JGI | ISS | |
| UniRef100_G7J146 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TIR-NBS-LRR type disease resistance protein n=2 Tax=Medicago truncatula RepID=G7J146_MEDTR | SoyBase | E_val: 1.00E-117 | ISS |
| UniRef100_I1KEK9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEK9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g42730 not represented in the dataset |
Glyma06g42730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g42730.2 sequence type=CDS gene model=Glyma06g42730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTATTTGTGAGTTTTAGAGGTATAGGCACTCGCAATAGTTTCACCGATCATCTTTTTGCTGCTCTTCAAGGGATAACCAAAATATCAATGAAGGAGAACTCTTATTGGAACATGAGCTCTTCCAAGCAATTGAAGGACCCTATTGACTATGCATCATCCACATGGTGCATGAAAGAGCTGACAAAGATCGTTGATTGGGTTCAAGAAACAGGTCCAAGTGTGCTCCCTGTTTTCTATGATGTCACTCCTTCGGAGGTTCGAAAACAGAGTGGACAGTTTGGAGAGGCTTTTACTGAACACGAAGAAAGGCCTCAAAATGAAGAAATTGAAAAAATTGTTCAAGAGGTAATCAACATACTAGGTTATAATCAAATTTCGAGTTTTGGGGATGATTTAGTTGATATACATTCTGGTGTGAAACGAATGGAAGATTTTCTAGATCTGGACGCAAATGAAGTTGTTCTAGTTGTAGGAATTTGTGGGATTGGTGGAATAGGAAAGATGACACTTGCTCACTTGCTACTGCTTTATTTAATAAAATCTCTCCTCGATATGATGCTTATATATCTAGGTGCAGGGAGTAGGGTCATCATAATCTCTAGAGATAGACATATCTTAAAAAATTATGAAGTAAATAAAGTTTACAATGTTCAACTCCTTGACAAGGATAAAGCTCTACAATTATTTTGTAGAAAAACTTTCAAAACTGAAGATATTGTCAAAGATTATGAACAATTGGTATATGATGTATTAGAGTATGTCCATGGCTTTCCTCTAGCAATTAAAGTATTAGCCTCATTTTTATTTGACAGAGACGTTTTTGAGTGGAGGAGTGCATTGGCTAGATTGAAAGAAAATTCAAGCAAAGATATCATGAATGTGTTGCAATTAAGTTTTGATGGATTAGAAAAAATGAAAAAAGAAATATTTCTAGATATTGCTTGTTTTAATTATTCTTCCGTTTGGAATAATAACATAGAGAAAATTCTAGAATATCAAGAATTTTATCTTGACATTAGTATGAAAGTTCTCATTGAAAAATCACTCATAAGTCGTGATTGTTGGGGTACTATTTCTATGCATGACTTGATGAGAGAGTTGGATAGAAGTATTGTTCAAGAAAAATCACCTAAGGAGCTAAGAAAGTGGAGCAAGTTTATATTCACATCAACTCTGCCTTATAGCAATATCAAACAATTATGGAAAGGCACAAAGTTATTATATATTTGTCGGCCTAATTTGGGAGCACTAGATCTCCCCTACTCCAAAAATCTTATTGAGATGCCAGACTTAAGAGGAGTTCCACATATTCAGAAGCTTAATCTTCGAGAATGTGTAGAAATCGTGCGGATTGATCCATCCATTGGTATTTTAAAAGAGCTTACTTATTTAAATTTGAAAAATTGTGAAAATCTTCTCGTTGATCTGAATATCATTTTTGGGCTCAATTCTCTTGAGAAGCTAAATCTCTCTGGCTGTTCCAAATTACAAAATAGCCATCTATTGAAGAAACCAAAGGAGACAGAACTTTTGGAGAACGTTGATATAAATAGAAGTGCCATCCAATCATCAACATCCTCTGCATTAAAAGTTTTAATGTGGCCTTTCCATTTTCTTTCTTCTCGAAAACCTGAAGAATCATTTGGTTTGTTGTTGCCTTATTTGCCTTCTTTTCCATGTTTGTATAGTCTTGACCTTAGCTTCTGCAATCTTCTTAAAATACCTGATGCTATTGGGAACTTACATTCTTTGGAAGACTTAAATTTGAGGGGAAACAAATTTGTGACACTGCCTAATACCATCAAGCAACTTTCCAAACTTAAATATTTGAACTTGGAGCACTGCAAGCAGCTGAAATACTTGCCCGAGCTTCCAACAACAAAAGAAAAAACACTTAACCAATATTGGAGGTGGGGAATATATGCTTTTGATTGCCCCAAGTTGAGTGAGATGGAACACTGTCATAGCATGGTTTATTCTTGGATGATGCAACACTTTAAGGTATACTTGAAATCCTCTAGTCACTACGGTATGAATTCTGTTATTCCTGGAACTAAAATTCCAAGGTGGTTTATTAAACAAAATGTGGGTAGTTCAATAAGCATGGACCTGTCTCGTGTTATTGAAGACCTATATTGTAGAGGTGTTGCTTGTTGTGCAATATTTGTGGCACATGATGATCCAAATAATAATTTCGATAATTGGCGGGGACCTCCTTATGATTATATTGAATTTGGTTTTGAAAATTTAACGAATATGTGTAGCCTCACTTTCCCGGTTCCAATTCTTTTCAAGAGAGCTTTGGTGACAGTTGGATTCGATCACTTGTTAATAATGTTTTTCAGCCGAGAACTACTCACTGATTTAGCAAGGGTACGTTCAAATGGTCTTGATACAGTGAAATTTGTAGCCAACTCTGGCCCTTATTATGAAGGTTTGCGTTTGGAGGTGAAAAGTTGTGGGTATCATTTGCTATTTGAAGACCATCTTCAACGATTCAAATCAAACATGATGTTCTCTGGAAACTCTTCATCCTGA
>Glyma06g42730.2 sequence type=predicted peptide gene model=Glyma06g42730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFVSFRGIGTRNSFTDHLFAALQGITKISMKENSYWNMSSSKQLKDPIDYASSTWCMKELTKIVDWVQETGPSVLPVFYDVTPSEVRKQSGQFGEAFTEHEERPQNEEIEKIVQEVINILGYNQISSFGDDLVDIHSGVKRMEDFLDLDANEVVLVVGICGIGGIGKMTLAHLLLLYLIKSLLDMMLIYLGAGSRVIIISRDRHILKNYEVNKVYNVQLLDKDKALQLFCRKTFKTEDIVKDYEQLVYDVLEYVHGFPLAIKVLASFLFDRDVFEWRSALARLKENSSKDIMNVLQLSFDGLEKMKKEIFLDIACFNYSSVWNNNIEKILEYQEFYLDISMKVLIEKSLISRDCWGTISMHDLMRELDRSIVQEKSPKELRKWSKFIFTSTLPYSNIKQLWKGTKLLYICRPNLGALDLPYSKNLIEMPDLRGVPHIQKLNLRECVEIVRIDPSIGILKELTYLNLKNCENLLVDLNIIFGLNSLEKLNLSGCSKLQNSHLLKKPKETELLENVDINRSAIQSSTSSALKVLMWPFHFLSSRKPEESFGLLLPYLPSFPCLYSLDLSFCNLLKIPDAIGNLHSLEDLNLRGNKFVTLPNTIKQLSKLKYLNLEHCKQLKYLPELPTTKEKTLNQYWRWGIYAFDCPKLSEMEHCHSMVYSWMMQHFKVYLKSSSHYGMNSVIPGTKIPRWFIKQNVGSSISMDLSRVIEDLYCRGVACCAIFVAHDDPNNNFDNWRGPPYDYIEFGFENLTNMCSLTFPVPILFKRALVTVGFDHLLIMFFSRELLTDLARVRSNGLDTVKFVANSGPYYEGLRLEVKSCGYHLLFEDHLQRFKSNMMFSGNSSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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