Report for Sequence Feature Glyma06g42690
Feature Type: gene_model
Chromosome: Gm06
Start: 45962938
stop: 45964614
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g42690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G58720 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:21716920-21717892 REVERSE LENGTH=238
SoyBase E_val: 1.00E-38 ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1493
KOG
Anaphase-promoting complex (APC), subunit 11
JGI ISS
PTHR22766 Panther
RING FINGER PROTEIN 24-RELATED
JGI ISS
PTHR22766:SF26 Panther
ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_G7JDV1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JDV1_MEDTR
SoyBase E_val: 3.00E-98 ISS
UniRef100_I1KEK8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEK8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g42690
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g42690
Paralog Evidence Comments
Glyma12g15810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g42690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g274300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g42690
Coding sequences of Glyma06g42690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g42690.1 sequence type=CDS gene model=Glyma06g42690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCCGCAACATCAACAATTTCACACCTTTGCCAGGGTCATGGCAAAGAGGTTTTAGATCCTTTGATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACGGATCTCACTCTACTCATGCCACCGATGGCAGAAGTTCGGGTGTATTAGCTCGACAACGATTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCAGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAGGATATGGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCAGTGGTAGAAATTACCAAATCAACAGCTTTGAGCAAGCTTAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCTGCAAAGCCTTTGAAAGAGAAGCAGAGAGAAAATGATGAAGATAGCAAGAGCTGTGCTATTTGTTTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATAGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGTATGACTTACTAA
Predicted protein sequences of Glyma06g42690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g42690.1 sequence type=predicted peptide gene model=Glyma06g42690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSRNINNFTPLPGSWQRGFRSFDDHTFNHRESNEVPVFYGSHSTHATDGRSSGVLARQRFSDFRNPLGFHSIPNFPAPPPRRQQIHAHNEDMGRLREIFLHPPQRSTFQTSTQALPVVEITKSTALSKLKKVVYDPPPKRYARRVSLYYRNNAAKPLKEKQRENDEDSKSCAICLEDFDPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEIGRGNHSSFNNNDIANLEPSNLINGELLSILRAMEEAFQLGSMTY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
