Glyma06g42590 - SoyBase

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Report for Sequence Feature Glyma06g42590

Feature Type:	gene_model
Chromosome:	Gm06
Start:	45895667
stop:	45896913
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g42590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50260	AT	Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein \| chr5:20455605-20456862 FORWARD LENGTH=361	SoyBase	E_val: 4.00E-128	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
KOG1543	KOG	Cysteine proteinase Cathepsin L	JGI		ISS
PTHR12411	Panther	CYSTEINE PROTEASE FAMILY C1-RELATED	JGI		ISS
PTHR12411:SF44	Panther	CATHEPSIN L-RELATED	JGI		ISS
PF00112	PFAM	Papain family cysteine protease	JGI		ISS
PF08246	PFAM	Cathepsin propeptide inhibitor domain (I29)	JGI		ISS
UniRef100_A4PIZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine proteinase n=1 Tax=Lotus japonicus RepID=A4PIZ3_LOTJA	SoyBase	E_val: 2.00E-176	ISS
UniRef100_I1KEJ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEJ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g42590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g42590

Paralog	Evidence	Comments
Glyma12g15760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g42590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g273400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g42590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g42590

Limit To All Plant Sequences

>Glyma06g42590.1   sequence type=CDS   gene model=Glyma06g42590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCATGGGCAAAAAGCAGCACATTTTAGCTCTTGTGCTCCTTCTCTCAATCTGCACTTCCCAAGTAATGTCCCGCAACCTCCATGAGGCATCCATGTCCGAAAGACATGAGCAGTGGATGAAGAAATATGGGAAGGTATATAAGGATGCTGCAGAGAAGCAAAAACGTTTACTGATATTCAAGGATAATGTTGAATTCATTGAATCCTTCAATGCTGCCGGGAACAAACCTTACAAGCTTAGCATCAATCACCTAGCTGACCAAACCAATGAGGAATTTGTGGCTTCCCATAATGGATACAAATACAAGGGATCACATTCACAAACACCATTCAAGTATGGAAACGTTACTGATATTCCTACTGCAGTGGATTGGAGGCAAAATGGAGCTGTTACTGCAGTCAAGGACCAAGGCCAATGTGGTAGCTGCTGGGCATTTTCAACAGTTGCTGCAACAGAAGGTATCTACCAGATAAGTACAGGTATGCTAATGTCCCTTTCAGAGCAAGAGTTAGTGGATTGCGACAGCGTGGATCATGGTTGTGATGGAGGTCTCATGGAAGATGGGTTTGAATTCATTATTAAAAATGGTGGAATCAGCAGTGAGGCAAACTACCCTTACACAGCAGTTGATGGAACTTGTGATGCAAGCAAAGAGGCTTCTCCAGCAGCTCAAATAAAGGGCTATGAAACAGTACCTGCTAACAGTGAGGAGGCACTGCAGCAAGCAGTTGCAAACCAACCAGTGTCGGTTTCCATTGATGCTGGAGGATCTGGTTTCCAATTCTACTCAAGTGGGGTTTTCACAGGACAATGTGGGACTCAGCTAGACCATGGTGTTACTGTTGTTGGTTATGGTACCACTGATGATGGTACTCATGAGTATTGGATAGTGAAGAACTCATGGGGCACACAATGGGGTGAAGAAGGATACATAAGAATGCAACGAGGCATAGATGCCCAAGAAGGCCTTTGTGGCATTGCCATGGATGCCTCGTACCCAACTGCTTAG

Predicted protein sequences of Glyma06g42590

Limit To All Plant Sequences

>Glyma06g42590.1   sequence type=predicted peptide   gene model=Glyma06g42590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSMGKKQHILALVLLLSICTSQVMSRNLHEASMSERHEQWMKKYGKVYKDAAEKQKRLLIFKDNVEFIESFNAAGNKPYKLSINHLADQTNEEFVASHNGYKYKGSHSQTPFKYGNVTDIPTAVDWRQNGAVTAVKDQGQCGSCWAFSTVAATEGIYQISTGMLMSLSEQELVDCDSVDHGCDGGLMEDGFEFIIKNGGISSEANYPYTAVDGTCDASKEASPAAQIKGYETVPANSEEALQQAVANQPVSVSIDAGGSGFQFYSSGVFTGQCGTQLDHGVTVVGYGTTDDGTHEYWIVKNSWGTQWGEEGYIRMQRGIDAQEGLCGIAMDASYPTA*

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