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Report for Sequence Feature Glyma06g42545

Feature Type:gene_model
Chromosome:Gm06
Start:45870226
stop:45870672
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g42545
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27420AT Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein | chr2:11726311-11727519 REVERSE LENGTH=348 SoyBaseE_val: 1.00E-28ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0008234GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity SoyBaseN/AISS
PTHR12411Panther CYSTEINE PROTEASE FAMILY C1-RELATED JGI ISS
PTHR12411:SF44Panther CATHEPSIN L-RELATED JGI ISS
PF00112PFAM Papain family cysteine protease JGI ISS
PF08246PFAM Cathepsin propeptide inhibitor domain (I29) JGI ISS
UniRef100_A4PIZ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine proteinase n=1 Tax=Lotus japonicus RepID=A4PIZ3_LOTJA SoyBaseE_val: 5.00E-57ISS
UniRef100_I1KEJ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEJ7_SOYBN SoyBaseE_val: 3.00E-98ISS

Expression Patterns of Glyma06g42545
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g42545 not represented in the dataset
Glyma06g42545 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g42545 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g273100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g42545
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g42545
>Glyma06g42545.1   sequence type=CDS   gene model=Glyma06g42545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCACCAGCAAAATACAGCAAAACTTAGCCCTATTCCTTCTCCTTTCAATTGAGATTTCCCAAGTAATGTCCCGCAAACTTCATGAAACATCCTTGAGAGAAGAACATGAAAATTGGATTGCACGATATGGACAAGTGTATAAGGTTGCAGCAGAGAAGGAAACGTTTCAGATATTCAAGGAAAATGTGGAGTTCATTGAATCTTTCAATGCTGCAGCCAACAAACCTTACAAGCTTGGAGTTAATCTCTTTGCTGACCTTACACTTGAAGAATTCAAGGATTTCCGTTTTGGACTCAAGAAGACCCATGAGTTTAGCATAACACCATTTAAGTATGAAAACGTGACTGATATTCCTGAAGCTCTAGACTGGAGGGAAAAAGGAGCCGTTACTCCAATCAAAGACCAAGGTCAATGTGGTAAGATCAAGAAGATCATATAA
Predicted protein sequences of Glyma06g42545
>Glyma06g42545.1   sequence type=predicted peptide   gene model=Glyma06g42545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFTSKIQQNLALFLLLSIEISQVMSRKLHETSLREEHENWIARYGQVYKVAAEKETFQIFKENVEFIESFNAAANKPYKLGVNLFADLTLEEFKDFRFGLKKTHEFSITPFKYENVTDIPEALDWREKGAVTPIKDQGQCGKIKKII*






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