SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G58720 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:21716920-21717892 REVERSE LENGTH=238 | SoyBase | E_val: 8.00E-38 | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1493 | KOG | Anaphase-promoting complex (APC), subunit 11 | JGI | ISS | |
| PTHR22766 | Panther | RING FINGER PROTEIN 24-RELATED | JGI | ISS | |
| PTHR22766:SF26 | Panther | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7JDV1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JDV1_MEDTR | SoyBase | E_val: 1.00E-96 | ISS |
| UniRef100_I1KEJ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEJ1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g42450 not represented in the dataset |
Glyma06g42450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g272400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g42450.2 sequence type=transcript gene model=Glyma06g42450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGGAAAGAAAGGCCCACAATGGTCGTCTGTAATTGAAACTATCACTTATCATCTCATATACAAATTTCAAACTAGTGATGCAACTATATATATTCCCTTCTAAAATTTTCATCTCTCATTTTATTCCTTTTTTAGGAGCCCTTTCCATCTTCTCAGAACTTCCAATACGCATCATATTAATAAAGCATCCATCAACATATGAGAATAAGATTCTTCCTTGATTTATTTTGCTTAATTTCTGAGCAGCAGCTACTAGAGCATCTTCAACATGGAGTGAGAATCAGGCTTTGAATCAGCATGGAAAATGAAGGAACTCATCAAAAAGTATGAGTAGAAGTGACACCATTATCACTGTAAGGATATATTCTTGCTTACACCCACATGAACAGAACAAATGAATTCCCGAAGTTGACATATGAAGCAATATTTGCACCCCGAAAAAGAAAAGTATTTTACATGATCAATTGAAGAGGAAGGTGAAACCATCATGAGCCGCAACATGAACAATTTCACACCTTTGCCAGGGTCATGGCAAAGAGGTTTTAGATCCTTTGATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGCCACCTTTTCCTGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAAGATATCGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCGGTGGTAGAAATTACCAAATCAGCAGCTTTGAGCAAGCTCAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCCGCAAAGCCTTTGAAAGAGAAGCAGGGAGAAAATGATGAAGATAGAAAGAGTTGTGCTATTTGTCTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATTGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGAATGACTTACTAATGTACACACAAGAATTTGCTAGAGTTGGGAGATTGATTTATTTGTAGCTTATTCCAGCATATACACTGAATTTACTATGATATTTGATAGGTAGAACTTGTGAGTGATATAAAAATTAATGAGATAAGATTGGAAACCATTTTGTTATCCAATATTTTTCA
>Glyma06g42450.1 sequence type=CDS gene model=Glyma06g42450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCCGCAACATGAACAATTTCACACCTTTGCCAGGGTCATGGCAAAGAGGTTTTAGATCCTTTGATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGCCACCGATGGCAGAAGTTCGGGTGTATTAGCTCGAGAACGATTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCTGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAAGATATCGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCGGTGGTAGAAATTACCAAATCAGCAGCTTTGAGCAAGCTCAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCCGCAAAGCCTTTGAAAGAGAAGCAGGGAGAAAATGATGAAGATAGAAAGAGTTGTGCTATTTGTCTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATTGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGAATGACTTACTAA >Glyma06g42450.2 sequence type=CDS gene model=Glyma06g42450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGCCACCTTTTCCTGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAAGATATCGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCGGTGGTAGAAATTACCAAATCAGCAGCTTTGAGCAAGCTCAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCCGCAAAGCCTTTGAAAGAGAAGCAGGGAGAAAATGATGAAGATAGAAAGAGTTGTGCTATTTGTCTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATTGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGAATGACTTACTAA
>Glyma06g42450.1 sequence type=predicted peptide gene model=Glyma06g42450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRNMNNFTPLPGSWQRGFRSFDDHTFNHRESNEVPVFYRSHSTHATDGRSSGVLARERFSDFRNPLGFHSIPNFPAPPPRRQQIHAHNEDIGRLREIFLHPPQRSTFQTSTQALPVVEITKSAALSKLKKVVYDPPPKRYARRVSLYYRNNAAKPLKEKQGENDEDRKSCAICLEDFDPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEIGRGNHSSFNNNDIANLEPSNLINGELLSILRAMEEAFQLGRMTY* >Glyma06g42450.2 sequence type=predicted peptide gene model=Glyma06g42450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTLSIIVNPMRCLCFTDLTLLMPPFPAPPPRRQQIHAHNEDIGRLREIFLHPPQRSTFQTSTQALPVVEITKSAALSKLKKVVYDPPPKRYARRVSLYYRNNAAKPLKEKQGENDEDRKSCAICLEDFDPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEIGRGNHSSFNNNDIANLEPSNLINGELLSILRAMEEAFQLGRMTY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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