Glyma06g42360 - SoyBase

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Report for Sequence Feature Glyma06g42360

Feature Type:	gene_model
Chromosome:	Gm06
Start:	45610798
stop:	45612229
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g42360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21710	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:7648380-7649138 FORWARD LENGTH=175	SoyBase	E_val: 2.00E-10	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KEI6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEI6_SOYBN	SoyBase	E_val: 6.00E-77	ISS

Expression Patterns of Glyma06g42360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g42360

Paralog	Evidence	Comments
Glyma12g16011	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g42360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g271700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g42360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g42360

Limit To All Plant Sequences

>Glyma06g42360.2   sequence type=transcript   gene model=Glyma06g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAAACCCCACTAACTGCATCATAGCTCATCTTCACTTGTTGCCATTTTGAAAGCCAAACCTTCAATATGAGTTCCACAACCAAAGCCCCTCCTTCCTCTAATGATGCTATGTCAACTGAGGAGAGTGGTTGGACGACATACTTTGATGACTTCTTCAACAACCATGTTGTGGATAACAACAAGTGTTCCATGCCTTTATCCGGTGGTGTTGCTAGCTCCTCCCTTGTCTCCGATGCAGCTTCTTCGGCAGAGAAGAAAAAAGTGGCAAATAGTAAACAAGTTGAGGAGTTTAATTATGTGAATAGATATGTCAAGAGATCAAGTTTCAAGAAGAGGAAGGATGTCATAACGGCTTTGATTGATGACTCTTTGGAAGATACGGCAACTTCTCCTCTTAATAGTCCCAAGGTTTTGTATGCGAATCAGAAGATTGACAAGGCAAACAGACGGAAGTAGTATAAACCTTTTCTCAGTAGGAGAAAGGCACATCAAGACAAAGAGATGAGCAAAAAGAATAGAATTTTAATGGGAGGGATTGTGAATGCAAAGAGTAAAAAGAAGAGTGGCCTTTGCTTAATTAGTTCTCTTGTCAATGGTAGCAAACTTTTTATGTTAATTATATAGCATTATTTGTTAAAGTTCAATGATATTCATTTTTGCCTATGAAAAATAGTATTATGTTAAAGTTCTCTCTCTTTCTATTAGAGCAAATAGAAAATAATGGTGGAAAATGTTACCGCTGCATATAATGAATTGAACCTTTTTCTACTGTTCCCA

Coding sequences of Glyma06g42360

Limit To All Plant Sequences

>Glyma06g42360.1   sequence type=CDS   gene model=Glyma06g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCACAACCAAAGCCCCTCCTTCCTCTAATGATGCTATGTCAACTGAGGAGAGTGGTTGGACGACATACTTTGATGACTTCTTCAACAACCATGTTGTGGATAACAACAAGTGTTCCATGCCTTTATCCGGTGGTGTTGCTAGCTCCTCCCTTGTCTCCGATGCAGCTTCTTCGGCAGAGAAGAAAAAAGTGGCAAATAGTAAACAAGTTGAGGAGTTTAATTATGTGAATAGATATGTCAAGAGATCAAGTTTCAAGAAGAGGAAGGATGTCATAACGGCTTTGATTGATGACTCTTTGGAAGATACGGCAACTTCTCCTCTTAATAGTCCCAAGTAG

>Glyma06g42360.2   sequence type=CDS   gene model=Glyma06g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCACAACCAAAGCCCCTCCTTCCTCTAATGATGCTATGTCAACTGAGGAGAGTGGTTGGACGACATACTTTGATGACTTCTTCAACAACCATGTTGTGGATAACAACAAGTGTTCCATGCCTTTATCCGGTGGTGTTGCTAGCTCCTCCCTTGTCTCCGATGCAGCTTCTTCGGCAGAGAAGAAAAAAGTGGCAAATAGTAAACAAGTTGAGGAGTTTAATTATGTGAATAGATATGTCAAGAGATCAAGTTTCAAGAAGAGGAAGGATGTCATAACGGCTTTGATTGATGACTCTTTGGAAGATACGGCAACTTCTCCTCTTAATAGTCCCAAGGTTTTGTATGCGAATCAGAAGATTGACAAGGCAAACAGACGGAAGTAG

Predicted protein sequences of Glyma06g42360

Limit To All Plant Sequences

>Glyma06g42360.1   sequence type=predicted peptide   gene model=Glyma06g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTTKAPPSSNDAMSTEESGWTTYFDDFFNNHVVDNNKCSMPLSGGVASSSLVSDAASSAEKKKVANSKQVEEFNYVNRYVKRSSFKKRKDVITALIDDSLEDTATSPLNSPK*

>Glyma06g42360.2   sequence type=predicted peptide   gene model=Glyma06g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTTKAPPSSNDAMSTEESGWTTYFDDFFNNHVVDNNKCSMPLSGGVASSSLVSDAASSAEKKKVANSKQVEEFNYVNRYVKRSSFKKRKDVITALIDDSLEDTATSPLNSPKVLYANQKIDKANRRK*

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