Glyma06g42340 - SoyBase

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Report for Sequence Feature Glyma06g42340

Feature Type:	gene_model
Chromosome:	Gm06
Start:	45579718
stop:	45585658
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g42340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10310	AT	Annotation by Michelle Graham. TAIR10: high-affinity K+ transporter 1 \| chr4:6392008-6395667 FORWARD LENGTH=506	SoyBase	E_val: 3.00E-150	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0006814	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transport	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008324	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015079	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sodium ion transmembrane transporter activity	SoyBase	N/A	ISS
PF02386	PFAM	Cation transport protein	JGI		ISS
UniRef100_B9IN02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sodium transporter hkt1-like protein n=1 Tax=Populus trichocarpa RepID=B9IN02_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1KEI5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEI5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g42340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g42340

Paralog	Evidence	Comments
Glyma12g16040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g42340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g271600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g42340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g42340

Limit To All Plant Sequences

>Glyma06g42340.1   sequence type=CDS   gene model=Glyma06g42340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATTTTGCCTACTTGAGCCAAAAACAACATCGTTTTTGTAGTTTTTTCCCACACAGCCTTGGATTCTTTGTCCATTTTCTAGCCTTCCATGTCCACCCCTTCTTCGTTCAACTTTGTTATTTCGTGATCCTTTCTCTGCTTGGTTACCTAGGTCTCAAGGTCTCAAAGCCTAGAACCCCCGTTAGACCAAATGACTTGGACCTCTTTTACACTTCTGTTTCTGCTTCCACAGTTTCAAGCATGGTAGCTGTTGAAATGGAGGTTTTCTCCAATTCTCAACTAATTCTCCTCACCCTTCTCATGTTTGTTGGTGGTGAAGTTTTCACTTCCGTGCTCGACCTTATATTTGCTAGGTATAAATTCACCCAAAGTGTCCAAAATAAAGTTCCCACCCATCATTCATATCAGACTCAATCAGAATTTTCTCCGGTGGAACATATATGTGGTTTAGACAAAAATAACGATAACACCAATCCTTTTTCACCCACAAAGAAGCCCCCAATTAATGCCAATCAAATTGAACTTGGTTTAGTTTCTATTGATCACTCAGAATCAGAAAACCACAAACCAAGTGATAGTAAACTTCCTGATACATATCTTCAATTCCTGCAGATAAAAAAAACTAAAAGTAATATTAACGTTCCAAAGGGCACGGTAGAGTCCTTTAACGACAGTGATAGACTTAAGTATAACTGTCTTAGTTTCCTGACTTTTGTAGTTTTAGGTTACCTTGTTGTGGTTCAATTTGTTGGCTTTAGTTTTGTTTCTTTGTACATAACTTTGGTACCAAGTGCAAGACAAGTACTGAAAAACAAAGGCATAAAGATTGCAACGTTTTCCTTGTTTACCATAGTTTCCACGTTTGCTAGTTGTGGTTTCATCCCCACCAACGAGAACATGATGGTTTTCAAGAAGAATTCAGGGCTTCTTCTCCTGGTCCTCCCACACATCCTTCTAGGTAACACCCTTTACCCACCGTGCTTGAGGCTTGTAATAATGGCTCTGAAAAGGGTCACCAGAAGAGAGGAATACTCGCACTTGCTGAAGAATTTCAAAGACGTGGGGTATGATCACATGCTTTCTGCTCTTCATTGTTGCCTCCTGGTTGCAACTGTGTTGGGTTTCAATCTTGTTCAGTTTGTGATGTTTTGCTCTGTGGAGTGGAACACCAAAATCATGGAGGGTTTGAATGTGTATGAGAAAGTGGTGGCGTCGTTGTTTCAAGTCACAAACGCGAGACACTCTGGTGAATCTGTCTTTGATCTCTCCTCCATATCTTCAGCCATATTGGTACTCTTCGTTGTCATGATGTACCTCCCACCATACACAACATTTTTACCAGTAAGAGAGCACGAAAATGATGTGAAGAGAAACGAAAAAAGCGTAGTGGAGTGTCTTGTATTCTCTCAACTCTCTTACTTGGTCATTTTCATTATTTTGATTTGCATCACTGAGAGCAACAGCTTAAAAGAGGATCCCCTCAACTTTAATGTGTTGAACATCACCCTAGAAGTCATCAGTGCTTATGGGAACGTAGGGTTGTCAATGGGATACAGCTGTGCTAGGCAATTGAAACCTGATGCGACGTGCAAAGATTCATGGGTTGGATTCTCCGGAAGGTGGAGTAGCAAAGGCAAGTTCATCCTTATCTTGGTCATGTTCTTTGGGAGACTCAAGAAATTTAACATGAAAGGTGGCAAAGCCTGGAACCTCTCCTAG

Predicted protein sequences of Glyma06g42340

Limit To All Plant Sequences

>Glyma06g42340.1   sequence type=predicted peptide   gene model=Glyma06g42340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNFAYLSQKQHRFCSFFPHSLGFFVHFLAFHVHPFFVQLCYFVILSLLGYLGLKVSKPRTPVRPNDLDLFYTSVSASTVSSMVAVEMEVFSNSQLILLTLLMFVGGEVFTSVLDLIFARYKFTQSVQNKVPTHHSYQTQSEFSPVEHICGLDKNNDNTNPFSPTKKPPINANQIELGLVSIDHSESENHKPSDSKLPDTYLQFLQIKKTKSNINVPKGTVESFNDSDRLKYNCLSFLTFVVLGYLVVVQFVGFSFVSLYITLVPSARQVLKNKGIKIATFSLFTIVSTFASCGFIPTNENMMVFKKNSGLLLLVLPHILLGNTLYPPCLRLVIMALKRVTRREEYSHLLKNFKDVGYDHMLSALHCCLLVATVLGFNLVQFVMFCSVEWNTKIMEGLNVYEKVVASLFQVTNARHSGESVFDLSSISSAILVLFVVMMYLPPYTTFLPVREHENDVKRNEKSVVECLVFSQLSYLVIFIILICITESNSLKEDPLNFNVLNITLEVISAYGNVGLSMGYSCARQLKPDATCKDSWVGFSGRWSSKGKFILILVMFFGRLKKFNMKGGKAWNLS*

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