SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45320 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18684182-18686107 REVERSE LENGTH=392 | SoyBase | E_val: 1.00E-172 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_UPI000233A16A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A16A related cluster n=1 Tax=unknown RepID=UPI000233A16A | SoyBase | E_val: 0 | ISS |
|
Glyma06g42206 not represented in the dataset |
Glyma06g42206 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g270700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g42206.1 sequence type=CDS gene model=Glyma06g42206 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAACCCCCACGCAAGCAACTAAACAAGAAATTGAATCATCTGGTTCTTGGTCCTGCTGCTGGACAAGGCTTGTCAAATCGTTTGCAATGCCAAGGGACAAAAGCACTTAATAGGATCCATTCTTCTAACAGCAGATCAGGCGTAGATGGAAGTATCACATTTGTCACTGTCTTCACCATTTATAATTCTTCTCTCAATGATGTAGACGATAAATCATCAAATACAGTTGTTGGCAATGCTTCATATAATAAGTTTGGCAGGTCCACGGCTTTGTTGAATGTCTTCATTAACTTCATTCAGGTCGCAATGCCCCAGAGCAAAGTGATTATTCTGACTGATCCAGTGTCTGACCTTTCAGTGCTACGAAATGGAGTATCTCTGTACCCTATAGAAGGTGAATATTCACGAGACAAGTTGATGCTCCAAAGGATCAGGTCTTACATTACCTTTTTAGAAACAAGGCTCCAGAATCTTTCTCAGAAGAAGCCAAAAAATATCACTCATTACATCTTCACTGATTCTGATATAGCAGTGGTTGATGATTTAGGGCAGATTTTTCGTGACCATCCTAATTTTCATGTGGCTCTGACCTTTAGGAACAATAAGGCTCAACCTTTGAATTCAGGATTCATTGCAGTAAGGGGTACCCCGGAAGCAATTTTAAGGGCAAAGCTTTTCCTACAAGAGGTCTTGAAAGTTTACAGCACAAAATATAGAAATGCTTCCCGCATGCTGGGTGATCAATTAGCTCTTGCTTGGGTTGTGAAGTCAAAACCTCATTTTGATGCCAGCAGGTTTGGCAAAGCACTTGCTTTCTCTGAAGATATTGGGGGTACCTCAGTAGTGTTCTTACCTTGTTCTTTGTACAATTGGACTCCACCTGAGGGTGCTGGTCAATTTCATGGCATGCCATTGGATGCTAAGGTTGTTCATTTTAAAGGATCAAGAAAACGTCTAATGCTCGAATCTTGGAACTTTTATTCCTCATCTCTTGAGGTTTCAGACATGTTATGTCTCATTTTGGGAAGTGGGAGAACCAAATATGATTTTTGA
>Glyma06g42206.1 sequence type=predicted peptide gene model=Glyma06g42206 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEPPRKQLNKKLNHLVLGPAAGQGLSNRLQCQGTKALNRIHSSNSRSGVDGSITFVTVFTIYNSSLNDVDDKSSNTVVGNASYNKFGRSTALLNVFINFIQVAMPQSKVIILTDPVSDLSVLRNGVSLYPIEGEYSRDKLMLQRIRSYITFLETRLQNLSQKKPKNITHYIFTDSDIAVVDDLGQIFRDHPNFHVALTFRNNKAQPLNSGFIAVRGTPEAILRAKLFLQEVLKVYSTKYRNASRMLGDQLALAWVVKSKPHFDASRFGKALAFSEDIGGTSVVFLPCSLYNWTPPEGAGQFHGMPLDAKVVHFKGSRKRLMLESWNFYSSSLEVSDMLCLILGSGRTKYDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
